Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02299 ATGGAAAACAACACTATCAGTTCCGAGCAAACAGTGCAAGATGGAAAACTCTACAGACACCTCAATTCTCTAATTGTCTCTCATCTTCGTCACAACAATCTCACTCAGGCTGCAACTGCTGTTGCTTCAGCAACTATGACACCATTGAATGTTGAAGCTCCACCCAATAAGCTTCTTGACTTGGTTGCTAAGGGTCTTGCAGCGGAAAAGGATGACGTGTCAAGAGGGATTTCATCTTCTCCATTTCAAGATTTGGGTGCATCATTGCCCTTGCCTCGTCCGGGTGCAACAGCCATTGACTTTAGCTCTTTGCCAGATTTAAAAGGTTCGTCAAAAGGTTTCCCAAAACATGAGACACGGCACCTTTCAGAACACAAGAATGTTGCCAGATGTGCTAGGTTTAGTCCTGATGGAAGGTTTGTTGCTACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCAAAAATCAAGCAAATGTTGCTCCCAGATGCAAAGGATGGTCCTGTGCGGTCTGTTGTAAAAACATATTATGACCATATACAACCGGTAAATGATTTGGATTTTCATCCGCAAGGTACTATCTTGGTCTCTGGAGCCAAAGATCGGACAATAAAGTTTTTTGATATTTCAAAAACCAACGCCAAGAGATCTTACAGGGTTATCCAGGATACGCACAATGTTCGCTCTGTATCTTTTCACCCCTCAGGGGACTTTCTCTTGGCAGGCACTGATCATGCGATTCCACATTTGTATGATATAAATACCTTTCAATGCTATCTGTCCGCAAATGTCCCAGATAATAGCCCTAATGGAGCCATAAACCAGGTTAGATATTCTTGTACAGGTGCCATGTATGTTACAGCATCGAAAGATGGTGCTATTCGATTGTGGGATGGCATGACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAACAGCAGAGGTTACCAGTGTAATTTTTACAAAAGATGAAAGGTTTGTCCTCTCTTGTGGTAAGGACTCTACCATAAAGCTTTGGGAGGCTGGTTCTGGAAGATTAGTCAAACAATATCTCGGTGCCGTACATACACAACTAAGATGCCAGGCTATATTTAATGCGACAGAAGAATTTATTCTATCCATAGATGAGCTGAACAACGAGGTTGTTATCTGGGATGCAATGACAACGGAAATAGTAGCAAAATGGCCTTCTAATCACGTTGGTGCACCACGCTGGCTTGAACACTCACGAGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGATCAATCCGGTTCTGGAAGGAGGCTTAA 1305 0.4268 MENNTISSEQTVQDGKLYRHLNSLIVSHLRHNNLTQAATAVASATMTPLNVEAPPNKLLDLVAKGLAAEKDDVSRGISSSPFQDLGASLPLPRPGATAIDFSSLPDLKGSSKGFPKHETRHLSEHKNVARCARFSPDGRFVATGSADTSIKLFEVSKIKQMLLPDAKDGPVRSVVKTYYDHIQPVNDLDFHPQGTILVSGAKDRTIKFFDISKTNAKRSYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANVPDNSPNGAINQVRYSCTGAMYVTASKDGAIRLWDGMTANCVRSITAAHGTAEVTSVIFTKDERFVLSCGKDSTIKLWEAGSGRLVKQYLGAVHTQLRCQAIFNATEEFILSIDELNNEVVIWDAMTTEIVAKWPSNHVGAPRWLEHSRVESAFISCGTDRSIRFWKEA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02299 434 Gene3D - 110 434 IPR015943 GO:0005515
Trre11g02299 434 FunFam Cleavage stimulation factor subunit 50 105 434 - -
Trre11g02299 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 163 IPR001680 GO:0005515
Trre11g02299 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Trre11g02299 434 SUPERFAMILY WD40 repeat-like 115 432 IPR036322 GO:0005515
Trre11g02299 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Trre11g02299 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 212 - -
Trre11g02299 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Trre11g02299 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 300 - -
Trre11g02299 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 344 - -
Trre11g02299 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 156 - -
Trre11g02299 434 Pfam WD domain, G-beta repeat 273 300 IPR001680 GO:0005515
Trre11g02299 434 Pfam WD domain, G-beta repeat 305 343 IPR001680 GO:0005515
Trre11g02299 434 Pfam WD domain, G-beta repeat 174 210 IPR001680 GO:0005515
Trre11g02299 434 Pfam WD domain, G-beta repeat 226 249 IPR001680 GO:0005515
Trre11g02299 434 Pfam WD domain, G-beta repeat 119 153 IPR001680 GO:0005515
Trre11g02299 434 SMART WD40_4 115 154 IPR001680 GO:0005515
Trre11g02299 434 SMART WD40_4 216 254 IPR001680 GO:0005515
Trre11g02299 434 SMART WD40_4 257 300 IPR001680 GO:0005515
Trre11g02299 434 SMART WD40_4 171 210 IPR001680 GO:0005515
Trre11g02299 434 SMART WD40_4 303 344 IPR001680 GO:0005515
Trre11g02299 434 SMART WD40_4 392 432 IPR001680 GO:0005515
Trre11g02299 434 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 6 433 IPR044633 GO:0005848|GO:0031124
Trre11g02299 434 CDD WD40 118 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02299 Trre-Chr11 27396300 27401068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02299 175 431 Miscellaneous Gene Families AT5G08390 22.093 2.12e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02299 K14406 - gmx:100809908 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02299 11 27396300 27401068 Trre11g02299 11 27396300 27401068 ECH