Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02058 ATGTCCGTTCAACTCAAACTCTCTCGTCCAAATCGTATCTATCGCCCTTCCGAACTTCTAGAAGGAAAAATAACTGTAGAAACACAATCTTCAATTTCCCACTATGGGATTCGTCTCACTATCAAAGGATCTGTCAATTTGCAGGTTCGTGGTGGATCTGCTGGGGTTGTTGAGTCATTCTATGGAGTTATTAAGCCAATCCCAATTGTGAAAAGGACCGTTGAAGTTAAATCTTCCGGAAAGATTGGTTCGGGTACAACTGAGATACCGTTTTCATTGAATCTTAGGCAGGATGAGAACTTAGAAAAGTTTTACGAGACTTTCCATGGTACAGATATTAGTATCCAGTATTTAGTGACTGTAGATATATCTCGTGGATACTTGCATAAATCATTATCAGCAACGACGGAGTTCATTATTCAAAGTGATAAAGGTGATCTTCTACAAAGACCACTTTCTCCTGAGATGGTAATCTTTTATATTACTCAGGACACTCAAAGACATCCACTTCTTCCCGAATTAAAATCCGGTGGATTTCGAGTGACAGGAAAAATCTGTACTCAGTGTTCTTTGTCTAGTTCTATTAATGGTGAACTAACTGTAGAAGCATCAGCAGTTCCAATTCAATCTATTGACATTCAGTTATTTCGCGTTGAATCCATTCTTCACGGGGAGAAAATTGTGACGGAAACCTCTCTGATTCAAACAACTCAGATAGCAGATGGAGATGTATGCCGTAAATTGACTCTGCCTATTTATGTAATACTTCCTCGTCTTTTGACCTGTCCAACAATCTTTGCCGGTCCCTTTTCAATTGAGTTTAAAGTAGCAATTGTTATAAGCTTTCAATCAGAGCTATCTAAACTGCATAAAAAGCCCGACTCAAGAACACCACGACTCTGGCTGGCGATGGAAACATTACCGCTTGAATTGGTTCGGATGATGTAA 948 0.3935 MSVQLKLSRPNRIYRPSELLEGKITVETQSSISHYGIRLTIKGSVNLQVRGGSAGVVESFYGVIKPIPIVKRTVEVKSSGKIGSGTTEIPFSLNLRQDENLEKFYETFHGTDISIQYLVTVDISRGYLHKSLSATTEFIIQSDKGDLLQRPLSPEMVIFYITQDTQRHPLLPELKSGGFRVTGKICTQCSLSSSINGELTVEASAVPIQSIDIQLFRVESILHGEKIVTETSLIQTTQIADGDVCRKLTLPIYVILPRLLTCPTIFAGPFSIEFKVAIVISFQSELSKLHKKPDSRTPRLWLAMETLPLELVRMM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02058 315 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 11 290 IPR028934 GO:0006886
Trre11g02058 315 Gene3D - 2 143 IPR014752 -
Trre11g02058 315 SUPERFAMILY E set domains 3 172 IPR014756 -
Trre11g02058 315 FunFam Vacuolar protein sorting-associated protein 26 182 289 - -
Trre11g02058 315 FunFam Down syndrome critical region protein 3 1 143 - -
Trre11g02058 315 Gene3D - 185 292 IPR014752 -
Trre11g02058 315 Pfam Vacuolar protein sorting-associated protein 26 11 280 IPR028934 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02058 Trre-Chr11 23104322 23108814 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02058 K25730 - gmx:100820593 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02058 11 23104322 23108814 Trre11g02058 11 23104322 23108814 ECH