Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02057 ATGGCGGATCAGAATCAGAAAGCAGAGATCTTTGAACTCAACAATGGAACCGTGCAGCTACTTGTTACCAATCTTGGTTGCACAATCACCTCCTTCTCTGTACCTGGCAAAGATGGTGTATTGTCCGATGTTGTTCTTGGCCTTGATTCTGTTGAATCCTATCAGAAAGGTCTTGCTCCTTATTTTGGCTGCATTGTGGGCCGTGTCGCAAACCGGATTAAGGATGGCAAGTTTAAACTTGATGGGGTTGAGTACTCTTTACCTCTCAACAAACCTCCAAACAGTCTCCATGGTGGAAATGTCGGGTTTGATAAGAAGGTATGGGAGGTGACTGAATATAAAAAGGGTGAAACTCCATCAATCACTTTTAAGTATGAAAGCCATGATGGAGAAGAAGGTTATCCTGGTGACATCACTGTTACCGCAACTTACACGCTGATCTCAAAGACGACTTTGAGGCTCGACATGGAAGGAGTACCGAAGAACAAGCCAACCATCATTAACTTAGCTCAGCATACCTATTGGAACTTAGCTGGTCATAACTCAGGCCATATACTTGACCATTCAGTTAAGATAGCGGCTAATCATGTCACTCCTGTTGATCAGAATACTGTGCCAACCGGTGAAATCATGCCAGTGAAAGGTACACCTTTTGATTTCACATCTGAGAGGAGAGTAGGCGACACCATCAATCAGGTTGGATTAGGATATGACCACAATTACGTTCTTGATTGTGGGGAAGAGAAAGCCGGTTTGAGGCATGCTGCAAAAGTTAGGGATCCATCAAGTTCAAGGGTACTTAACTTATGGACAAATGCACCTGGTATGCAATTCTACACTGCAAACTATGTCGACAACGTAGCTGGAAAAGCAGGCACTGTATATGGAAAGCATTCCGGATTATGTCTTGAGACACAAGGATTCCCAGATGCTATAAACCAATCAAATTTTCCGTCTGTTGTGGTTCGACCTGGTGAGAAGTATCAACATTCCATGTTGTTTGAATTTTCAATTGAATGA 1020 0.4304 MADQNQKAEIFELNNGTVQLLVTNLGCTITSFSVPGKDGVLSDVVLGLDSVESYQKGLAPYFGCIVGRVANRIKDGKFKLDGVEYSLPLNKPPNSLHGGNVGFDKKVWEVTEYKKGETPSITFKYESHDGEEGYPGDITVTATYTLISKTTLRLDMEGVPKNKPTIINLAQHTYWNLAGHNSGHILDHSVKIAANHVTPVDQNTVPTGEIMPVKGTPFDFTSERRVGDTINQVGLGYDHNYVLDCGEEKAGLRHAAKVRDPSSSRVLNLWTNAPGMQFYTANYVDNVAGKAGTVYGKHSGLCLETQGFPDAINQSNFPSVVVRPGEKYQHSMLFEFSIE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02057 339 FunFam Aldose 1-epimerase 2 338 - -
Trre11g02057 339 CDD galactose_mutarotase_like 14 336 IPR047215 GO:0016853
Trre11g02057 339 Gene3D - 1 339 IPR014718 GO:0030246
Trre11g02057 339 PIRSF GALM 1 339 IPR015443 GO:0016853|GO:0019318
Trre11g02057 339 PANTHER ALDOSE-1-EPIMERASE 7 338 - -
Trre11g02057 339 SUPERFAMILY Galactose mutarotase-like 4 337 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre11g02057 339 Pfam Aldose 1-epimerase 11 334 IPR008183 GO:0005975|GO:0016853
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02057 Trre-Chr11 23100744 23103105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02057 6 337 Miscellaneous Gene Families AT3G47800 50.000 2.51e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02057 K01785 - gmx:100776238 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02057 11 23100744 23103105 Trre11g02057 11 23100744 23103105 ECH