Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02056 ATGTATAATTATTTCCTTGTTTTTGCTTCTTCAATAAGTGATGATCCCACTACTAAAGAATTTGTAAAGCTTGGAGGAATTAGATGTGCAAGCCCTTTGGAAGCAGGGAATGGGGCAGAAGCTTTAGTTGTCCTTATATCTCACACGGATCAGATTAATGATCTGATTTTTGGGGATGAGGGTGCTTTGAAAGGTCTAAAACCAGATACAGTTCTTATTCTTCGTTCAACCATATTACCATCAGCTCTCCAGAAACTGGAGAAAGATCTGGAAGAAACTCAGAAGATAGCCTATGTTGTTGACGCATATGCGTCTTTTGGGAGGTCTGATGCTTTGAATGGAAAAGTCATTATTGTATCATCTGGAAGATCGGATGCCATTGCAACAGTACGGCCTCTTCTTTCAGCAATGTGTGAAAAACTGTTCACTTTTGAGGGTGAAATTGGTGGTGGCAGTAAGGTTAAAATGGTCAGTGTGATGTTGGAAGGCATTCATTTCATTGCTTCAGTGGAGGCTCTTTCTCTTGGTGCAAAAGCTGGAATTCATCCATGGATAATCTATGACATAATTTCCAATGCCGCTGGAAATTCATGGGTATTCAAGAATAATGTTCCACTTTTATTGAAAGGAGAGGTTAAGCATCACATTCTTAACACTTTGGTTAAGGAATTGGAAACAATTTTGGATATGGCCAAGTCACTTACTTTTCCACTTCCACTTTTGGCGACTACTCACCAACAACTTATTCATGGGGTTTCACAGGTTTGTTATGAAGATGATGATGACACAACATTAATTAAGATTTGGGAAAAAGTTTATGGCGTGAAAGTCTCAGATGCTGCAAATGCAGATGTGTATAACCCTGAGCAACTTGCATCTCAAGTCACTACTGCTTCTAAGAGTGGCAAGCGGGTTGGTTTTGTTGGCCTCGGAGCTATGGGATTTGGCATGGCAACTCATTTGCTCAGATCAAATTTCAGCGTTTTTGGTTATGACGTATATGAACCAACTCGAGTCCGATTTTCAGATGCTGGTGGCGTTGTTGGAAAATCTCCAGCCGAAGTGAGTAAAGACGTTGATGTTCTCATAATCATGGTGGCTAATGAAGTTCAAGCAGAGAATGCTTTATATGGAGAATATGGCGCTGTTTCAGTTCTTCCTCCCGGTGCAACTATCATTCTCTCTTCTACAGTTTCTCCAGCATATGTGAGTCAGCTAGAGCGTAGATTGCATAATGGAGATAAGAATTTAAACCTGGTGGATGCCCCTGTTTCTGGTGGTGTTCAAAGGGCCTCACTGGGAACACTTACGATAATGGCTTCAGGGACTGATGATGCTCTCAAGAGTGTTGGTAATGTCTTGGCAGCCTTGAGCGAAAAGCTTTATGTTATCAGAGGTGGTTGTGGTTCTGGAAGTGGTATAAAGATGGTTAACCAATTGCTAGCTGGAGTTCATATTGCATCAGCGGCTGAGGCAATGGCATTTGCAGCAAGATTGGGTTTGAATACAAGACTATTGTTTGATTTTATAACATTTAGTGGGGGAACATCCTGGATGTTTGAAAATCGTGTTCCACACATGCTAAACAATGATTACACTCCTTATTCAGCGCTTGATATCTTTGTGAAAGATATGGGAATCGTTACTCGTGAATCGTCTTCGTTAAAAGTTCCACTTCAACTGTCAACTATAGTTCACCAACTGTATCTGTCAGGTTCTGCTGCTGGCTTTGGGCGGAAAGATGATGCTGGTGTGGTCAAGGTTTATGAAACTCTAACTGGTGTTAGAGTTGAAGGAAAACTCGAGTCTCTCAGAAAAGATGTTGTGTTGCATTCTCTTCCACCAGAGTGGCCCCAAGATCATGTTCTTGACATACAAAAATTAAAAGAAAGCAATTCAAAGATTTTGGTTGTTCTGGATGATGATCCAACAGGAACACAAACTGTTCATGATATTGAGGTATTAACAGAATGGACCGTTGATTCACTGATTGATCAGTTTAGAAGATGTCCAAAATGCTTTTTCATTTTGACAAATTCCAGGGCATTGAGTTCCGACAAGGCCACTATATTGATAAAAGAGATTTGCAGAAATCTAAACACTGCAGCAAACTCAGTTGACAACATCGATTATACAGTTGTTTTGAGGGGAGATTCAACTTTGCGCGGTCATTTTCCAGAGGAAACAGATGCTGTCATTTCAGTATTGGGTGAAATGGATGCATGGATTATTTGTCCATTTTTCCTTCAAGGAGGCCGTTACACTATTAATGATACACATTATGTTGCTGATTCCGACATCCTTGTTCCTGCAGGGGACACAGAGTTTGCCAAAGATGCTGCCTTCGGTTACAAATCTTCAAACCTACGTGATTGGGTAGAGGAAAAGACAAATGGTCGCATACTTGCAAATAGCGTTGTATCTATTTCTATCCAGATTTTGAGGAAAGGAGGTCCAGATGCAGTTTTTCAGCTTCTATGCAGTTTAAAGAAGGGGTCAGTTTGCATAGTTAATGCAGCTAGTGAAAGGGACATGACTGTATTTGCACTTGGAATGATCAAGGCAGAGTTGTCAGGGAAACGTTTCTTGTGTCGCACTGCTGCTAGCTTTGTATCTGCCCGTATCGGAATCATCTCTAAGCCTCCAGTGTTGCCAAAGGATCTAGGAATAGCTAGAGAAAGGAACGGAGGTTTGATAATTGTGGGATCATATGTTCCAAAAACGACAAAGCAGGTTGAACAGCTTAAATTACAGTGTGCCCAGTTTTTAAGAAGCATTGAGGTTTCCGTTGAAAAACTTGCATTGGGGACTATTGAGGAGAGGGAGGATGAAATCAGTAGAGCAGCTGAATTAGCAGATGTATATCTTAGAACTCATAAAGACACACTTATAATGACCAGCCGAAATCTCATAACTGGGAAATCTGCGTCTGAGAGTTTGGACATTAACTATAAAGTGAGTTCTGCTTTGGTGGAAATAATGAAAAGAATAACTACAAAACCCCGCTATATAATTGCAAAGGGTGGTATTACCTCTTCAGACCTTGCTACAAAAGCTCTTGGTGCAAGATGTGCCAAGATTGTTGGACAAGCACTCGCTGGTATTCCCTTGTGGCAACTGGGACCTGAAAGTAGACATCCTGGAGTTCCTTACATTGTCTTCCCAGGTAATGTTGGTGACAGCGGAGCATTGGCAGAAGTTGTGAAGTCCTGGACTTATCCAACGAGGCTTTCATCAACAAAAGAGATTCTTAACAATGCAGAAAATGGTGGATATGCTGTTGGAGCATTTAATGTCTATAATTTGGAAGGAGTTGATGCTGTTGTTTCTGCTGCAGAGGAAGAGCAAAGTCCTGCAATATTACAGATTCATCCTGGTGCTTTGAAGCAAGGAGGAATTCCCTTGGTTGCTTGTTGCATTTCTGCTGCAGAACGTGCCAGTGTACCCATTACTGTTCACTTTGATCATGGAACTTCAAAGCAAGATCTTGTGGAAGCTCTTGAACTGGGATTCAGTTCTGTAATGGTGGATGGTTCACATCTTTCTTTCAATGAAAATGCCGCATACACAAAATTTATATCATTATTGGCTCACTCAAATGATATGTTGGTTGAAGCTGAGCTAGGAAGATTGTCGGGGACAGAAGATGACTTGACTGTCGAAGAGTATGAAGCCAAGCTAACAGATGTTAATATGGCGGAAAAATTCATTGACGAGACTGGTATAGATGCTTTGGCAGTGTGTATTGGTAATGTGCATGGAAAGTACCCGGCAAGCGGACCAAATCTCAGATTAGATTTGCTTAAGGAACTGCATGTGTTGAGCCAGAAGAAAGGAGTTTTTCTGGTACTTCATGGTGCGTCGGGTTTGGGCGAAGAACTTGTTAAGGAATGCATAAATCTTGGTGTTAGAAAGTTCAATGTCAACACTGAAGTAAGAAAAGCATACATGGATTCCCTTATTACTCCTAAAAAAGATCTAGTTCATGTTATGGCTTCTGCAAAAGAAGCCATGAAAGCTGTAGTAGCAGAAAAAATGCATCTCTTTGGTTCAGCAGGAAAGGCATGA 4068 0.4105 MYNYFLVFASSISDDPTTKEFVKLGGIRCASPLEAGNGAEALVVLISHTDQINDLIFGDEGALKGLKPDTVLILRSTILPSALQKLEKDLEETQKIAYVVDAYASFGRSDALNGKVIIVSSGRSDAIATVRPLLSAMCEKLFTFEGEIGGGSKVKMVSVMLEGIHFIASVEALSLGAKAGIHPWIIYDIISNAAGNSWVFKNNVPLLLKGEVKHHILNTLVKELETILDMAKSLTFPLPLLATTHQQLIHGVSQVCYEDDDDTTLIKIWEKVYGVKVSDAANADVYNPEQLASQVTTASKSGKRVGFVGLGAMGFGMATHLLRSNFSVFGYDVYEPTRVRFSDAGGVVGKSPAEVSKDVDVLIIMVANEVQAENALYGEYGAVSVLPPGATIILSSTVSPAYVSQLERRLHNGDKNLNLVDAPVSGGVQRASLGTLTIMASGTDDALKSVGNVLAALSEKLYVIRGGCGSGSGIKMVNQLLAGVHIASAAEAMAFAARLGLNTRLLFDFITFSGGTSWMFENRVPHMLNNDYTPYSALDIFVKDMGIVTRESSSLKVPLQLSTIVHQLYLSGSAAGFGRKDDAGVVKVYETLTGVRVEGKLESLRKDVVLHSLPPEWPQDHVLDIQKLKESNSKILVVLDDDPTGTQTVHDIEVLTEWTVDSLIDQFRRCPKCFFILTNSRALSSDKATILIKEICRNLNTAANSVDNIDYTVVLRGDSTLRGHFPEETDAVISVLGEMDAWIICPFFLQGGRYTINDTHYVADSDILVPAGDTEFAKDAAFGYKSSNLRDWVEEKTNGRILANSVVSISIQILRKGGPDAVFQLLCSLKKGSVCIVNAASERDMTVFALGMIKAELSGKRFLCRTAASFVSARIGIISKPPVLPKDLGIARERNGGLIIVGSYVPKTTKQVEQLKLQCAQFLRSIEVSVEKLALGTIEEREDEISRAAELADVYLRTHKDTLIMTSRNLITGKSASESLDINYKVSSALVEIMKRITTKPRYIIAKGGITSSDLATKALGARCAKIVGQALAGIPLWQLGPESRHPGVPYIVFPGNVGDSGALAEVVKSWTYPTRLSSTKEILNNAENGGYAVGAFNVYNLEGVDAVVSAAEEEQSPAILQIHPGALKQGGIPLVACCISAAERASVPITVHFDHGTSKQDLVEALELGFSSVMVDGSHLSFNENAAYTKFISLLAHSNDMLVEAELGRLSGTEDDLTVEEYEAKLTDVNMAEKFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELHVLSQKKGVFLVLHGASGLGEELVKECINLGVRKFNVNTEVRKAYMDSLITPKKDLVHVMASAKEAMKAVVAEKMHLFGSAGKA 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02056 1355 Pfam Fructose-bisphosphate aldolase class-II 1079 1354 IPR000771 GO:0005975|GO:0008270|GO:0016832
Trre11g02056 1355 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 16 142 IPR006115 GO:0050661
Trre11g02056 1355 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 304 462 IPR006115 GO:0050661
Trre11g02056 1355 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 307 320 IPR002204 GO:0016491
Trre11g02056 1355 Gene3D - 149 274 IPR013328 GO:0016491
Trre11g02056 1355 Gene3D Aldolase class I 1072 1355 IPR013785 -
Trre11g02056 1355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 141 IPR036291 -
Trre11g02056 1355 Pfam Nucleotide-binding C-terminal domain 898 1064 IPR031475 -
Trre11g02056 1355 Gene3D - 466 598 IPR013328 GO:0016491
Trre11g02056 1355 Pfam Sugar-binding N-terminal domain 636 873 IPR010737 -
Trre11g02056 1355 SUPERFAMILY Aldolase 1079 1355 - -
Trre11g02056 1355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 303 462 IPR036291 -
Trre11g02056 1355 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 469 596 IPR008927 -
Trre11g02056 1355 Gene3D - 889 1071 IPR042213 -
Trre11g02056 1355 CDD TBP_aldolase_IIB 1080 1353 IPR000771 GO:0005975|GO:0008270|GO:0016832
Trre11g02056 1355 Gene3D - 297 465 - -
Trre11g02056 1355 NCBIfam ketose-bisphosphate aldolase 1077 1355 IPR000771 GO:0005975|GO:0008270|GO:0016832
Trre11g02056 1355 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 148 276 IPR008927 -
Trre11g02056 1355 Gene3D - 5 145 - -
Trre11g02056 1355 PANTHER 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED 296 599 - -
Trre11g02056 1355 Gene3D - 635 874 IPR037051 -
Trre11g02056 1355 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 149 268 IPR029154 GO:0051287
Trre11g02056 1355 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 469 589 IPR029154 GO:0051287
Trre11g02056 1355 SUPERFAMILY YgbK-like 636 1068 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02056 Trre-Chr11 23082867 23098005 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02056 - - aip:107617544 2244.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02056 11 23082867 23098005 Trre11g02056 11 23082867 23098005 ECH