Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01583 ATGAAGGAAATTACATCTTTTAATGGGACCCACATGGTTGTTCAATCAAGTAACCGTCGAACCGGATTTGGTTTTTTAAACCGGTTCAACCGGGTTCAGCCAATTTCAACTCATGTGAATCATATCATAGTTGCCGGTGGTGGTGGTGGTGGTGGAACTTTACATCGCCGCCGGGAGGCGGTTGTTGGATGTCAGGAACGGTATAAATGGGACCGTGGTGGGTCAGATGATAATATCAATAACCCGACCCGGAAAATTCGGGCTGAGGCTAATTGTCCACGTTGTTCTAAAGATATGAATTTGTTCTTCTCCAATAGTCATTTTCCATCCACTAGTGTTTCTGATGGTGGTGCTGATGGTGGCGGCGGTGGACGCGGTTCGAATTCGAGTCATAATGTTGGTGGTGGTGGAGGAGAAAGTGGTTATCAAGCAGTGAATCTATGTCCAAATTGTAAAACAGCATATTATTTTAGACCTTACAACACATCACCATTACAAGGTACATTTGTGGAAATTAGTAGATTAAGTAATAATAATAATAATGGTACTAGTAAATCTCAATTATCTAGAAGGTTAAAAAATGGTGGTGGAAAAGATAATGGTAGTGCTAGTAATAGTATTAAGAATGGTCAAGGAAGTGAGGAATTTGGTCTTAAAGGTAGTGCTAGTAATTGGCTTGAAGTTTCATTATGGGAAACTGTGAGATCTTACAATGGTGGTGCTGGTGGTGGTGGTAATAACGGGGAGCCACCGGAGACATGGCCACCACCGGTACGTGGCGGTGGTAATGGGAATGGTTTGGCTGTGCATACTCCTCCAGGTCCTCCTTTTGCACCTGGGGTTAATGTTATTCGGGCTACGGGACCGAGAGAAGGTGGTGGCAATGGTGAGAAGAATACATGGGGAGGTTCTAATTTAGGGAAGGATTTGCCGTCGCCAAAGGAGATATGTAAGGGTCTTGACAAGTTTGTTATTGGCCAAGGTAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAGAGAATCTACCATGCCACTTTACCGAAAGGGTCGGGTGGAGATTCAGGAATTTCAGACATATTTGATGATGACGAAAATGTTGAGCTTGAAAAGAGTAATGTTCTTTTGATGGGTCCAACAGGATCAGGGAAGACATTACTTGCAAAAACACTAGCTCGATTTGTGAATGTTCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTCGGAGAAGATGTTGAGTCTATACTACATAAACTACTTGCGGCAGCAGATTACAACGTTGCAGCAGCTCAACAAGGAATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATTAGCCGGGATGTTTCTGGTGAGGGTGTACAGCAGGCATTATTAAAAATGCTCGAAGGAACTATAGTAAATGTTCCGGAGAAAGGAGCCAGGAAACATCCACGTGGAGAAAACGTTCAGATGGACACAAAGAATATTCTTTTTATATGTGGTGGAGCATTTATTGATCTTGAAAAAACTATCTCAGAGAGACGGCAAGATTCCTCTATTGGTTTTGGAGCACCAGTTCGTGCCAACATGAGATCTAGTAGAATAATAGATTCTGCAGTAGCATCATCATTACTTGAATCGGTGGAAAGTTCTGATCTTATTGCATATGGCCTCATACCAGAATTTATCGGACGATTCCCCATCTTAGTTAGCTTGTCAGCCTTAACCGAAGAGCAACTTATGCAGGTCCTCACAGAACCAAAACACGCTCTTGGTAAACAGTACAAGAAATTAGTTAGCATGAATAATGTAAAGCTACACTTCACAGAGAAAGCTCTGAGACTGATAGCAAAGAAAGCAATGGCCAAAAATACTGGTGCTCGGGGTTTAAGAGCCTTAATAGAAAACATTTTAACCGATGCCATGTTTGAGATTCCTGATATTAAGACAGGAAGTGACCGCATTGACGCTGTAGTTGTTGATGAAGAATCAGTAGGATCACTAACGGCTCCTGGATGTGGAGGGAAAATTCTTCGCGGAGATGGTGCTTTGGAGCAGTACCTAGCAAAGGCAAAGGATTCAGAGGGGAGTGTTGAAGTAGCTGAATCAGAATTACAAGAGAGGGATTCAGATATTTCATCAAGAGCCATGAGCATGTAA 2187 0.4225 MKEITSFNGTHMVVQSSNRRTGFGFLNRFNRVQPISTHVNHIIVAGGGGGGGTLHRRREAVVGCQERYKWDRGGSDDNINNPTRKIRAEANCPRCSKDMNLFFSNSHFPSTSVSDGGADGGGGGRGSNSSHNVGGGGGESGYQAVNLCPNCKTAYYFRPYNTSPLQGTFVEISRLSNNNNNGTSKSQLSRRLKNGGGKDNGSASNSIKNGQGSEEFGLKGSASNWLEVSLWETVRSYNGGAGGGGNNGEPPETWPPPVRGGGNGNGLAVHTPPGPPFAPGVNVIRATGPREGGGNGEKNTWGGSNLGKDLPSPKEICKGLDKFVIGQGRAKKVLSVAVYNHYKRIYHATLPKGSGGDSGISDIFDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILHKLLAAADYNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENVQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRSSRIIDSAVASSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLMQVLTEPKHALGKQYKKLVSMNNVKLHFTEKALRLIAKKAMAKNTGARGLRALIENILTDAMFEIPDIKTGSDRIDAVVVDEESVGSLTAPGCGGKILRGDGALEQYLAKAKDSEGSVEVAESELQERDSDISSRAMSM 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01583 728 CDD RecA-like_ClpX 311 581 - -
Trre11g01583 728 MobiDBLite consensus disorder prediction 703 728 - -
Trre11g01583 728 MobiDBLite consensus disorder prediction 112 135 - -
Trre11g01583 728 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 306 675 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Trre11g01583 728 MobiDBLite consensus disorder prediction 176 218 - -
Trre11g01583 728 Gene3D - 304 582 IPR027417 -
Trre11g01583 728 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 583 686 - -
Trre11g01583 728 Pfam C-terminal, D2-small domain, of ClpB protein 584 653 IPR019489 -
Trre11g01583 728 Coils Coil 693 713 - -
Trre11g01583 728 MobiDBLite consensus disorder prediction 289 308 - -
Trre11g01583 728 MobiDBLite consensus disorder prediction 240 266 - -
Trre11g01583 728 SMART AAA_5 373 569 IPR003593 GO:0016887
Trre11g01583 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 669 IPR027417 -
Trre11g01583 728 Gene3D - 583 683 - -
Trre11g01583 728 Pfam AAA domain (Cdc48 subfamily) 373 577 IPR003959 GO:0005524|GO:0016887
Trre11g01583 728 SMART ClpB_D2_small_2 584 677 IPR019489 -
Trre11g01583 728 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 87 702 - -
Trre11g01583 728 MobiDBLite consensus disorder prediction 704 720 - -
Trre11g01583 728 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 304 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01583 Trre-Chr11 15442509 15447521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01583 377 476 Miscellaneous Gene Families AT3G02450 37.624 3.16e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01583 K03544 - gmx:100805340 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01583 11 15442509 15447521 Trre11g01583 11 15442509 15447521 ECH