Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01530 ATGGCTTCCATTCCTACTTTCTCTTCATATTCTCTTCTCCTCAAACCCAACAACACCAACACACTCTTTCCCAATCCAAATTCATCATCATCATCATCATGCAATCTCTCTCTCACCTCTCTCTTTCGAACCAAACTAACCCTCCAACGACCCATTTCCATCACCAATTTCAGTGCCACTTCTGAAACGGTGCCGTTTAACCTCCCCACTGACCCGAATCCACAATCTGATGAACCGCAGAAAAACCCAAATCCAAAGTGGTCGGCGAGGGCTATAAGGTCATATGCAATGGCGGAATTGGAAGTGAGGAAGATTAAGTATCCTAAAGTAGGAACTGAGAGTCTTCTCATGGGGATTTTAATTGAAGGAACAAGTAGAGCTGCAAAATTCTTAAGAGCTAATGGAATTACTTTTTTGAAAGTACAAGAACAAACGTTCGAGATACTTGGGAAATCTGACTATTTCTTTTCGAGCCCCGTACCTCCTCCTTTGACCGAACCACTTCAGAAAGCCCTCGATTGGGCAGTTAATGAGAAATTAAAGTCAGGTGAAGAAGGGGAAACAAATGTGACTCATTTACTTCTTGGAATTTGGTCACAAGAAAAATCAGCAGGTCGAAAGGTCTTGGCTGCCTTGGGTTTCAATGATGAAAAAGCCGAAGAAATTGCTAAAACAGCAGCTAGTGGAGATATTGATTGGAGTTTCAAGAAGAAAACAATCTTGGGATAA 729 0.4184 MASIPTFSSYSLLLKPNNTNTLFPNPNSSSSSSCNLSLTSLFRTKLTLQRPISITNFSATSETVPFNLPTDPNPQSDEPQKNPNPKWSARAIRSYAMAELEVRKIKYPKVGTESLLMGILIEGTSRAAKFLRANGITFLKVQEQTFEILGKSDYFFSSPVPPPLTEPLQKALDWAVNEKLKSGEEGETNVTHLLLGIWSQEKSAGRKVLAALGFNDEKAEEIAKTAASGDIDWSFKKKTILG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01530 242 SUPERFAMILY Double Clp-N motif 86 224 IPR036628 -
Trre11g01530 242 ProSiteProfiles Clp repeat (R) domain profile. 84 230 IPR004176 -
Trre11g01530 242 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 25 227 IPR044217 -
Trre11g01530 242 MobiDBLite consensus disorder prediction 63 83 - -
Trre11g01530 242 MobiDBLite consensus disorder prediction 63 87 - -
Trre11g01530 242 Pfam Clp amino terminal domain, pathogenicity island component 192 222 IPR004176 -
Trre11g01530 242 Pfam Clp amino terminal domain, pathogenicity island component 108 144 IPR004176 -
Trre11g01530 242 Gene3D - 86 236 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01530 Trre-Chr11 14921547 14925786 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01530 - - gmx:100786582 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01530 11 14921547 14925786 Trre11g01530 11 14921547 14925786 ECH