Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01528 ATGAGTTTCGCCGCATACAAGATGATGCAATGGCCAACCGGCGTAGACAATTGCGCCTCCGGTTATCTCACTCACTCTCGTTCCGATTTCACACCTCGTATCCCATCTCTTCAACCTGACGACGACGATCTCGACTCCGATTGGGTCTCACAACCTCCCGACCTTGCTCCTCTTCCCAATCTCGTCATTACCGCTGCTAATATTCTCGAAGTTTACATCATTCGTCTTCAACTCGATCCTCCTAAGTCATCTTCTGATTCTCGTGTTCTCGATGGTATTGCCGGTGCTTCGCTTGAACTCGTTTGTCATTACAGGTTGCATGGCAATGTTGAGAGTGTGGCTGTGTTGAGCGTTGGGGGTGGTGATGCTTCTAGGAGGCGAGATTCTATCATCTTAACTTTTAAAGATGCAAAGATTTCAGTTCTAGAGTATGATGATTCTATCCATGGACTTCGTACCAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATTTGAAAAGAGGTAGAGAACAATTTGCAACAGGTCCGGTGGCAAAGGTTGATCCTCAAGGAAGGTGTGGTGGTGTTCTTGTCTATGATTTGCAAATGATAATACTAAAGACTACTCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGACGTGTCAGGTTCTGGAGGTGCAGTTGCTGCTCGTATCGACTCATCTTATATGATAAATCTGCGTGACTTGGATATGAGGCATGTTAAAGATTTCACATTTGTTCATGGCTATATTGAACCTGTGATGGTGATCTTGCATGAACGTGAGCTTACTTGGGCTGGGCGTGTCTCATGGAAAAATCATACTTGCACGATATCAGCACTTAGCATAAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTCCCCCACGATGCCTACAAGCTTCTTGCAGTGCCCTCACCAATTGGTGGTGTTCTTGTCATTGGTGCGAACACTATTCATTATCACAGTCAGTCTGCTTCATGTGCATTGGCCTTGAACAGCTATGCCGTTTCCCTTGATAATAGTCAGGAGATGCCAAGATCAAGTTTCAATGTGGAACTTGATGCTGCCAATGCAACTTGGTTGGTGAATGATGTAGCCTTGCTGTCAACAAAAACTGGTGAACTGCTATTGCTTACTCTTATTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTATCATCTGGTATTACGACAATTGGAAATTCTATGTTTTTTCTCGCCAGTCGATTAGGAGACAGTATGCTGGTGCAATTTTCTTGTGGATCGGGTGTTTCAATGTCGTCGTCCAATCTAAAAGAAGAGGTTGGTGATTATGACGTAGATGCTTCTTCAGCAAAGAGATTGCGGAGGTCACCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGATCTGCTCCAAATAGAACAGAATCAGCACAGAAATCTTTCTCGTTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTTTCGTACGGTTTAAGAATAAATGCAGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGTTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTCTTCGGCAATCAATTCGTCCTGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTTTATCATAAGAGCACACGCTCACTTAATGCTGACTCATCTAAGCTGGCTGATGATGAAGATGAATATCATGCATACCTTATTATAAGTTTGGAGTCACGTACTATGGTACTAGAAACAGCTGATCTTCTGAGTGAGGTTACCGAAAGTGTTGACTATTATATTCAAGGAAAAACACTTGCTGCAGGGAATTTATTTGGAAGACGTCGAGTTATTCAAGTCTACGAACGTGGTGCTCGAATTCTTGATGGTTCTTTTATGACCCAAGATGTAAGCTTTGGAGCTTCTAACTCTGAATCTAATTATGGATCTGAGAGTGCTTTGGCACTATCTGTTTCTATAGCTGATCCATATGTCTTGCTCAGAATGAGTGATGGAAGTGTTAGACTTTTGGTTGGAGATCCTAGCACCTGCACCATTTCTGTCACTTCTCCAGCTTCATTTGAGGGATCAAAGGGATCGGTTTCATCATGTACACTCTACCATGATAAAGGACCCGAACCATGGCTAAGGAAGACAAGTACTGATGCATGGCTTTCTACCGGGGTTGGTGAGGCCATTGATGGCACCGATGGTGCGGTTCAGGACCATGGGGATGTTTATTGTGTTGTATGTTACGAAAATGGCAACCTTGAAATATTTGATGTACCCAATTTCAGCTGTGTTTTTTCCGTGGAAAATTTTCTGTCTGGAAAGAGCCACCTTGTTGATGCTCTGACAAAAGAGGCGCCAAAAGATTCTCAAAAGGGGGATAAGGTTTCTGATGGAGTGGTTAGCCAAGGAAGGAAGGATGCCCTGAATATGAAGGTTGTGGAGTTGGTCATGCAGAGATGGTCGGGAAAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACAACTCTTTGTTACCATGCTTACCTTTATGAAAATCCAGACGGCACTTCTAAGGTTGAGGATTCAATATCAGCTGGCACTAGTGTTTCTAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGTACATGCCAGAGAGGAGACATCAAATGCATCACCTTGTCAACAAATTAATATTTTCAAGAATATTGGTAGTCATGAAGGATTCTTCCTATTGGGGTCAAGACCGGCTTGGGTAATGGTGTTGAGAGAACGGCTTCGTGTTCATCCACAGTTATGTGACGGGTCTATTGTTGCTTTCACTGTCCTTCACAATGTAAACTGCAATCATGGCCTCATATATGTTACATCACAGGGTGTTTTAAAGATATGCCAACTGCCTTCTGGCTCAAACTATGACTGCTACTGGCCTGTACAGAAAGTTCCTCTTAAAGCTACTCCACATCAAGTAACTTACTATGCAGAGAAGAATTTGTATCCAATTATTGTTTCATTTCCTGTTCTTAAGCCACTAAATCAAGTCATTGCTTTAGTTGACCCAGATGCTAACCATCTGACTGAGAATCAGAATTTGAATTCTGAAGAGCAAAACCGCTTTTATAGCATTGAAGAATTTGAAGTCCGTATTATGGAGCCAGAAAAATCTGGCGGCCCTTGGCAAACAAAGGCAACAATACCCATGCAAAGTTCAGAAAATGCTCTCACTGTTAGGATGGTTACACTGATGAATACATCGTCAAAAGAAAACGAAACACTTTTAGCCGTTGGTACTGCTTACGTGCAAGGAGAGGATGTTGCTGCAAGAGGGCGTATACTCTTGTTCTCTTTGGGGAAAAATACTGATAATCCACAAGCTCTGGTTTCGGAGGTGTACTCGAAGGAATTAAAAGGTGCTATATCTGCCATGGCCTCACTTCAGGGTCATCTATTAGTAGCATCTGGTCCAAAAATTATCCTGCATAAGTGGACTGGCACTGAGTTAAATGGTGTTGCATTTTTTGATGTGCCACCACTGCATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATTGGCGACATCCATAAAAGCATATATTTTCTTAGTTGGAAAGAGCAGGGTTCTCAACTTAGCTTATTAGCCAAGGATTTTGGTTCTCTTGATTGTTTTGCCACAGAATTTTTGATTGATGGAAGTACTCTGAGTCTCATGGTTTCAGATGATCAAAAAAATATCCAGATTTTTTACTATGCACCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGGGCACACGTGACTAAATTCTTAAGGCTGCAGATGTTATCTACTTCTGATCGAACTGGTTCTGCTCCAGGCTCAGATAAAACCAATCGTTTTGCCTTGTTATTTGGTACATTGGATGGCAGTATTGGTTGCATTGCTCCTCTTGATGAAATCACATTCCGTAGACTGCAGTCTTTGCAGAAAAAGCTCGTTGATGCCGTTCCCCATGTTGCTGGCCTAAATCCAAGAGCTTTCAGATTGTTCCATTCAAATGGAAAGGCCCATCGACCAGGCCCCGACAGTATAGTTGACTGTGAGCTGCTATGCCATTATGAAATGCTTCAATTGGAGGAACAGCTTGAAATTGCTCACCAGGTTGGAACAACCCGGTCACAAATTCTCTCAAATCTAAATGATCTGTCTCTTGGAACAAGCTTCTTGTGA 4332 0.4238 MSFAAYKMMQWPTGVDNCASGYLTHSRSDFTPRIPSLQPDDDDLDSDWVSQPPDLAPLPNLVITAANILEVYIIRLQLDPPKSSSDSRVLDGIAGASLELVCHYRLHGNVESVAVLSVGGGDASRRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFATGPVAKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDVSGSGGAVAARIDSSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKNHTCTISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVSLDNSQEMPRSSFNVELDAANATWLVNDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLSSGITTIGNSMFFLASRLGDSMLVQFSCGSGVSMSSSNLKEEVGDYDVDASSAKRLRRSPSDALQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSLNADSSKLADDEDEYHAYLIISLESRTMVLETADLLSEVTESVDYYIQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESNYGSESALALSVSIADPYVLLRMSDGSVRLLVGDPSTCTISVTSPASFEGSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAVQDHGDVYCVVCYENGNLEIFDVPNFSCVFSVENFLSGKSHLVDALTKEAPKDSQKGDKVSDGVVSQGRKDALNMKVVELVMQRWSGKHSRPFLFGILSDGTTLCYHAYLYENPDGTSKVEDSISAGTSVSRLRNLRFVRVPLDVHAREETSNASPCQQINIFKNIGSHEGFFLLGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDCYWPVQKVPLKATPHQVTYYAEKNLYPIIVSFPVLKPLNQVIALVDPDANHLTENQNLNSEEQNRFYSIEEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLMNTSSKENETLLAVGTAYVQGEDVAARGRILLFSLGKNTDNPQALVSEVYSKELKGAISAMASLQGHLLVASGPKIILHKWTGTELNGVAFFDVPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRTGSAPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQKKLVDAVPHVAGLNPRAFRLFHSNGKAHRPGPDSIVDCELLCHYEMLQLEEQLEIAHQVGTTRSQILSNLNDLSLGTSFL 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01528 1443 FunFam Cleavage and polyadenylation specificity factor subunit 1 56 443 - -
Trre11g01528 1443 Pfam CPSF A subunit region 1076 1408 IPR004871 GO:0003676|GO:0005634
Trre11g01528 1443 Gene3D - 57 446 IPR015943 GO:0005515
Trre11g01528 1443 Gene3D - 965 1350 IPR015943 GO:0005515
Trre11g01528 1443 FunFam cleavage and polyadenylation specificity factor subunit 1 965 1350 - -
Trre11g01528 1443 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 128 668 IPR018846 -
Trre11g01528 1443 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 12 1429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01528 Trre-Chr11 14874815 14893862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01528 K14401 - gmx:100785543 2565.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01528 11 14874815 14893862 Trre11g01528 11 14874815 14893862 ECH