LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g01521	ATGAAACTTATTGTTCCTCTTCAAAGTGTAGTTCAAGGTCGTAATGGTTTTCTTCTTGGTAGTTTAATCCCTTGTGCTCTTTTTTACTTTCTTCAACTTTACCTTAAACGACGTCGTTCTAATTCTAATTCTAATTCTAACCCTTCTTCACCTTCTTCTTCTTCTCCTACTCTTGTTCTTCCTCGTTCTTCTTCTCGTTCTAATTTATCTTCTCGTGGTTCAATTTCTCGTGTTCGTGTTTCTAAACTTGCTTCCATTCTTTCTAAACCTGATGATTCTCTTTATTATATTGGCTTGGATAGAGTTTTGCAAGATCCTTATGATGTTTTTCTTAACCCCAATGGAATTATTCAGCTAGGTTTGTCTGATAACAAGCTGTGTTTGGATTTGATTGAGAAATGGTTGGTGAAGAATTTGGAGGGATCAGTGATGGGAAATGGTGATATGAATTTGAGTATTAATGGAATTGCGCCTTATCAACCCCATCATGGATTGAATGAATTGAAAATTGCCTTGGCAGATTTCATGCATCAGGTTATGGGAGGATCAGTGGAATTTGACCCATCAAATATGGTACTAACAGCTGGAGCAACTCCAGCTATCGAGATACTATCCTTCTGCTTGGCAGATCAAGGAAATGCATTCCTTGTGCCTACTCCGTTTTATCCAGGCTTTGACAGGGACGTAAGATGGCGTCCAGGGATAGACTTAATACCCGTTCACTGTCGAAGTACCGACAATTTCAATCTAAACATCACTGCTCTCGAACAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGTGGGATTCTCATCTCTAACCCTTCAAATCCCGTCGGGAATATCCTAACGCCAGATATGCTTTTCAGTCTTCTGGACTTCGCTGAAGATAAAAACATTCATATCATTGCCGATGAAGTATTCGCAGGCTCAACGTACGGAAGCGAGGAGTTTGTGAGTATAGCAGAAGTTCTAGATTCCGAATACATAGATAAAAGCCGAGTTCATATAGTATACGGCCTGTCAAAAGACCTCTCGATTGCCGGCTTTAGAGTCGGAGTTATATATTCACACAACAAAAATGTTTTGGATGCTGCCAAAAAAATGAGTAGATTTTCATCTATATCAGCTCCAACGCAGAGGTTAGTTACTTCAATGCTTTCAGATAAACGATTCATTCAGGAGTACATTGAAACCAACCAGAATAGAATAAGGCGTGTGCACGATGCGTTTGTTGATTCTTTAACTAAACTAGGAATCAAATGCGCCAAGAGCAGTGCCGGTATGTTCTGTTGGGCCGATATGAGTGGTTTAATCAAACCTTATAGTGAAAAAGGTGAACTTGAATTATGGGAGAAGTTTATGAGTGTTGCTAAGATCAATATAACTCCTGGATCAGCTTGCCATTGCATAGAACCAGGATGGTTTCGTATTTGTTTTACGACTATATCATTTGAGGAGATCCCTCTAGTTATTGAAAGGATTAGGAAAGTTGTTGAAACTTGTAAATCTTCAAGTTGA	1527	0.391	MKLIVPLQSVVQGRNGFLLGSLIPCALFYFLQLYLKRRRSNSNSNSNPSSPSSSSPTLVLPRSSSRSNLSSRGSISRVRVSKLASILSKPDDSLYYIGLDRVLQDPYDVFLNPNGIIQLGLSDNKLCLDLIEKWLVKNLEGSVMGNGDMNLSINGIAPYQPHHGLNELKIALADFMHQVMGGSVEFDPSNMVLTAGATPAIEILSFCLADQGNAFLVPTPFYPGFDRDVRWRPGIDLIPVHCRSTDNFNLNITALEQAFSQARKRGVKVRGILISNPSNPVGNILTPDMLFSLLDFAEDKNIHIIADEVFAGSTYGSEEFVSIAEVLDSEYIDKSRVHIVYGLSKDLSIAGFRVGVIYSHNKNVLDAAKKMSRFSSISAPTQRLVTSMLSDKRFIQEYIETNQNRIRRVHDAFVDSLTKLGIKCAKSSAGMFCWADMSGLIKPYSEKGELELWEKFMSVAKINITPGSACHCIEPGWFRICFTTISFEEIPLVIERIRKVVETCKSSS	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g01521	508	Gene3D	-	139	391	IPR015421	GO:0003824
	Trre11g01521	508	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	368	391	-	-
	Trre11g01521	508	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	212	233	-	-
	Trre11g01521	508	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	266	290	-	-
	Trre11g01521	508	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	302	325	-	-
	Trre11g01521	508	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	153	169	-	-
	Trre11g01521	508	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	190	210	-	-
	Trre11g01521	508	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	336	360	-	-
	Trre11g01521	508	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	119	145	-	-
	Trre11g01521	508	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	72	502	-	-
	Trre11g01521	508	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	342	355	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Trre11g01521	508	Gene3D	Aspartate Aminotransferase, domain 1	105	496	IPR015422	GO:0003824
	Trre11g01521	508	Pfam	Aminotransferase class I and II	118	497	IPR004839	GO:0009058\|GO:0030170
	Trre11g01521	508	SUPERFAMILY	PLP-dependent transferases	87	502	IPR015424	-
	Trre11g01521	508	MobiDBLite	consensus disorder prediction	41	70	-	-
	Trre11g01521	508	CDD	AAT_like	159	499	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g01521	Trre-Chr11	14768382	14772256	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g01521	K14270		-	gmx:100800539	808.52

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre11g01521	11	14768382	14772256	Trre11g01521	11	14768382	14772256	ECH