Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01508 ATGGAATCTGTTCTAAGCCAAGTTGGTACAGTTTTCTTCCAAAAGCCACGTTTAGGTGCCAAGGTTAACACTTGTTCCTTTGGTGGGGTTGATTCTAGGAGAGTAAGGAGTGTGGTGGTGAAAGCAGAGACAGGAGGTGTGAATAGTATAAATCCAGATATAAGGAAGAATGAAGATAAGGTTGTTGATTCTGTTGTGCTTAATGAACTCACCAAGCCTCTTACCCCTTATTGCAGATGTTGGAGATCAGGAACTTTTCCTCTATGTGATGGAAGCCATGTAAAGCACAACAAAGCCACAGGAGATAATGTTGGGCCTCTTCTTTTGAAAAAATAA 336 0.4107 MESVLSQVGTVFFQKPRLGAKVNTCSFGGVDSRRVRSVVVKAETGGVNSINPDIRKNEDKVVDSVVLNELTKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01508 111 Gene3D - 66 111 IPR042216 -
Trre11g01508 111 SMART znf_cdgsh 60 99 IPR018967 GO:0043231|GO:0051537
Trre11g01508 111 PANTHER CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1 35 111 IPR045131 GO:0010506|GO:0051537
Trre11g01508 111 Pfam Iron-binding zinc finger CDGSH type 65 93 IPR018967 GO:0043231|GO:0051537
Trre11g01508 111 FunFam CDGSH iron-sulfur domain-containing protein 1 66 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01508 Trre-Chr11 14644367 14645479 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01508 K23882 - gmx:100783951 145.976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01508 11 14644367 14645479 Trre11g01508 11 14644367 14645479 ECH