Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01418 ATGGCTTCTTCACACCCCAACAATGTTGGAATTCTCGCTATGGATATTTATTTCCCTACCACTTGTGTTCAACAGGAAGCTTTAGAGGCTCATGATGGTGTGAGCAAAGGGAAATATACTATTGGACTTGGACAAGATTGCATGGCATTTTGTACTGAGGTTGAAGATGTTATTTCAATGAGCATGACTGTTGTTAGCTCACTTCTTGAAAAATATAATATCGATCCAAAGAAAATCGGTCGCTTGGAGGTAGGAAGTGAAACTGTCATTGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAGTTTTTGAGGACAGTGGTAATACCGATATTGAAGGTGTTGATTCAACAAATGCTTGCTATGGTGGAACTGCAGCTTTGTTCAATTGTGTGAATTGGGTCGAGAGTAGTTCATGGGATGGACGCTATGGACTTGTCGTGTGTACAGACAGTGCGGTATATGCTGAAGGACCTGCTCGTCCTACTGGAGGAGCAGCCGCAGTTGCTATGCTTGTTGGACCCGATGCTCCTATTGCTTTTGAAAGCAAACTCCGTGGAAGTCACATGTCTCATGCTTATGATTTTTACAAGCCAAATCTTGCAAGTGAATACCCGGTTGTTGACGGAAAACTCTCACAAACTTGTTATCTCATGGCACTTGATTCTTGTTATCGAGTGTTTTGTGAGAAATATGAAAAATTGGAGGGGAGGCAATTTTCAATGTCAGATTCTGATTATTTTGTTTTTCATTCTCCGTACAACAAGCTTGTGCAGAAAAGTTTTGGTCGGCTATATTTCAATGATTTCCTGAGAAATCCAAGTTTTGTTGACGAAGTTTCCAGGCAAACTCTAGCACCTTATGCATCGTTATCTGGTGATGAAAGCTATCAAAGTCGTGATCTTGAAAAGGCAAACCAACAAGCGGCAAAACATACATATGAGGCAAAGGTACAACCAAGCACATTAATCCCAAAGCAAGTTGGCAACATGTACACTGCATCTCTATATGCTGCATTTATATCTCTCCTTCACAATAAGCACGACTCGCTGGTAGGTAAAAGGGTAGTCATGTTCTCATATGGAAGTGGATTAACCTCTACGATGTTTTCCTTCCGCCTTCAAGAAGGTCAACATCCCTTTAATTTGTCGAACATTGTAACAGTATTGAATGTTTCTTCCAAGTTGAAGCAAAGAGTTGAGTTACCTCCTGAAAAATTTGTCGAAAACACAAAAATCATGGAGTACCATTACGGAGGAAAAGACTTTGTAACTGGCCAAGACTGTAACTACTTACTTCCGGGCACATTCTATCTTACCAAAGTTGATTCCCTGTACAGGAGATTTTACGCCAAAAAGGACGCCGCAGCTAGTACGTGA 1380 0.4072 MASSHPNNVGILAMDIYFPTTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTEVEDVISMSMTVVSSLLEKYNIDPKKIGRLEVGSETVIDKSKSIKTFLMQVFEDSGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLVGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYRVFCEKYEKLEGRQFSMSDSDYFVFHSPYNKLVQKSFGRLYFNDFLRNPSFVDEVSRQTLAPYASLSGDESYQSRDLEKANQQAAKHTYEAKVQPSTLIPKQVGNMYTASLYAAFISLLHNKHDSLVGKRVVMFSYGSGLTSTMFSFRLQEGQHPFNLSNIVTVLNVSSKLKQRVELPPEKFVENTKIMEYHYGGKDFVTGQDCNYLLPGTFYLTKVDSLYRRFYAKKDAAAST 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01418 459 SUPERFAMILY Thiolase-like 179 451 IPR016039 GO:0016746
Trre11g01418 459 Gene3D - 2 454 IPR016039 GO:0016746
Trre11g01418 459 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Trre11g01418 459 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 4 454 - -
Trre11g01418 459 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 453 - -
Trre11g01418 459 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Trre11g01418 459 CDD init_cond_enzymes 8 372 - -
Trre11g01418 459 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
Trre11g01418 459 NCBIfam hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Trre11g01418 459 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 6 178 IPR013528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01418 Trre-Chr11 13856699 13862001 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01418 K01641 - gmx:100777679 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01418 11 13856699 13862001 Trre11g01418 11 13856699 13862001 ECH