Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01244 ATGCTTGCACTCACTAATTCGCCTCTACTTATTGCTAAATCATATGAAGAAATTAAAATAAAAAGTACACGAAGCATTTTTGTGGTATGTGCTGCTGCTAAAGGTCCAAGACCAAGATATCCAAGAGTTTGGAAGACTAATACAAAAATTGGTACCATTTCTAAAGCTGCTAAGCTTGTTCAATCCATTAAGGAACTTTCAAATCTGAAAGAGGAAGTTTATGGAGCTCTTGATACCTATGTCGCTTGGGAACTAGAATTTCCTTTAATTACAGTGAAAAAGGCCCTCAAGACTCTAGAATATGAGAAAGAGTGGAAGCGGATAATACAGGTAACAAAATGGATGTTAAGCAAGGGTCAAGGAAAGACAATGGGAAGCTATTTCACATTACTTAATGCTTTAGCTGAGGATGATCGACTAGATGAAGCAGAAGAGCTTTGGACGAAGTTATTAATGCAGTACACGGAAAGCTTGCCTCGTAGATTCTTTGATAAAATGATATCTATATACCATAAAAGAAATATGCATGACAAGATGTTTGAGGTGTTTGCAGACATGGAGGAGCTTGGTGTTAAACCTAGTATTTCTGTTGTCTCAATGGTTGGCGATCTCTTCAAGGAGCTAGGTATGATGGACAAATACGAGAAGTTACATAAAAAATATCCACCACCCCAATGGGAATATAGATACATCAAAGGAAAGCGTGTAAAAATCAAGGTGCAAGGGCCGTCTAATGATGTCGACAAATACATAAGAAAGCATGACAATTTTGAACCAAATTCAAGCTTAAGAGAGGATGATAGTTCAGAAGAGACTTCAGAGTTAACTGATGATGAACAGTTCGAACAAGATGCTGATGAAACACGCATGGAACCTGAACAGATATTTGACGAGTCATCTGAGAGTACGGAACCAAGTTTAGATGTATAA 930 0.3753 MLALTNSPLLIAKSYEEIKIKSTRSIFVVCAAAKGPRPRYPRVWKTNTKIGTISKAAKLVQSIKELSNLKEEVYGALDTYVAWELEFPLITVKKALKTLEYEKEWKRIIQVTKWMLSKGQGKTMGSYFTLLNALAEDDRLDEAEELWTKLLMQYTESLPRRFFDKMISIYHKRNMHDKMFEVFADMEELGVKPSISVVSMVGDLFKELGMMDKYEKLHKKYPPPQWEYRYIKGKRVKIKVQGPSNDVDKYIRKHDNFEPNSSLREDDSSEETSELTDDEQFEQDADETRMEPEQIFDESSESTEPSLDV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01244 309 MobiDBLite consensus disorder prediction 270 286 - -
Trre11g01244 309 Gene3D Tetratricopeptide repeat domain 46 272 IPR011990 GO:0005515
Trre11g01244 309 MobiDBLite consensus disorder prediction 247 269 - -
Trre11g01244 309 NCBIfam pentatricopeptide repeat 164 194 IPR002885 -
Trre11g01244 309 PANTHER OS01G0757700 PROTEIN 19 279 IPR044646 -
Trre11g01244 309 Pfam PPR repeat 166 191 IPR002885 -
Trre11g01244 309 Pfam PPR repeat 129 150 IPR002885 -
Trre11g01244 309 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Trre11g01244 309 MobiDBLite consensus disorder prediction 247 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01244 Trre-Chr11 12077472 12080652 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01244 - - mtr:25496504 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01244 11 12077472 12080652 Trre11g01244 11 12077472 12080652 ECH