Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01219 ATGGCTGACGTTGAGACATTCGCATTCCAAGCTGAGATTAATCAACTTCTTAGCTTGATTATCAACACTTTCTATAGCAATAAGGAGATTTTCTTGCGTGAACTTATCAGTAATTCTTCTGATGCTTTGGACAAAATTCGTTTTGAGGGTTTGACTGATAAGAGCAAGCTCGATGCTCAACCAGAGCTTTTCATTAGGATTGTGCCTGACAAAGCTAACAAGACTCTGTCCATCATAGACAGTGGCATTGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGTACTATTGCGAGGTCTGGAACCAAGGAGTTCATGGAGGCATTGCAGGCTGGTGCTGATGTGAGCATGATTGGACAATTTGGTGTTGGATTCTACTCTGCTTATCTTGTTGCAGAGAAAGTCATTGTTACCACCAAGCACAATGATGATGAACAATACATTTGGGAATCACAAGCTGGTGGCTCATTCACTGTTACAAGAGATACTGATGGCGAGCAACTTGGTAGGGGAACCAAGATCACTCTTTTCCTCAAAGAGGATCAGTTGGAATACCTGGAGGAGAGGAGGATCAAGGATCTTGTGAAGAAGCACTCTGAATTCATTAGTTATCCAATTAACCTTTGGACTGAGAAGACTATTGAGAAAGAGATCAGTGATGATGAAGATGATGAGCCGAAGAAGGAGGAAGAAGGGGCTATTGAGGAAGACATTTTGGGAGATAAGGTGGAGAAGGTAGTTGTCTCTGACAGGATTGTTGATTCTCCTTGCTGTTTGGTGACCGGTGAATATGGGTGGACTGCAAACATGGAGAGAATTATGAAGGCTCAGGCTCTGAGAGACACCAGCATGGGAAGCTACATGTCTAGCAAGAAAACTATGGAAATCAACCCTGATAATGGCATTATGGAGGAGTTGAGGAAGAGGTCTGAAGCCGACAAGAATGATAAATCGGTCAAGGACCTTGTGCTGCTGCTTTTCGAGACTGCACTTCTGACTTCAGGTTTTAGCCTTGATGATCCCAACACATTTGCTGGAAGGATTCATAGGATGTTGAAATTGGGTCTTAGCATTGATGAAGAGGAGACTGGTGCTGATGATGTTGATATGCCTCCTTTGGAAGAAGATGGTGCTGAGGAGAGCAAGATGGAAGAAGTGGACTAA 1164 0.4347 MADVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDAQPELFIRIVPDKANKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDTDGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPINLWTEKTIEKEISDDEDDEPKKEEEGAIEEDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDTSMGSYMSSKKTMEINPDNGIMEELRKRSEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFAGRIHRMLKLGLSIDEEETGADDVDMPPLEEDGAEESKMEEVD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01219 387 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 5 231 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Trre11g01219 387 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4 212 IPR036890 -
Trre11g01219 387 SUPERFAMILY HSP90 C-terminal domain 236 352 IPR037196 -
Trre11g01219 387 SMART HKATPase_4 27 182 IPR003594 -
Trre11g01219 387 MobiDBLite consensus disorder prediction 359 387 - -
Trre11g01219 387 CDD HATPase_Hsp90-like 14 202 IPR020575 -
Trre11g01219 387 PRINTS 90kDa heat shock protein signature 188 206 IPR020575 -
Trre11g01219 387 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Trre11g01219 387 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Trre11g01219 387 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Trre11g01219 387 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Trre11g01219 387 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Trre11g01219 387 PRINTS 90kDa heat shock protein signature 170 187 IPR020575 -
Trre11g01219 387 Pfam Hsp90 protein 184 231 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Trre11g01219 387 Pfam Hsp90 protein 236 380 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Trre11g01219 387 Gene3D - 226 362 IPR037196 -
Trre11g01219 387 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
Trre11g01219 387 FunFam Heat shock cognate protein 2 228 - -
Trre11g01219 387 FunFam Heat shock protein 90 alpha 210 357 - -
Trre11g01219 387 MobiDBLite consensus disorder prediction 361 387 - -
Trre11g01219 387 Gene3D - 3 225 IPR036890 -
Trre11g01219 387 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 181 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01219 Trre-Chr11 11732986 11735916 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01219 K04079 - csav:115706731 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01219 11 11732986 11735916 Trre11g01219 11 11732986 11735916 ECH