Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre11g01167 | ATGGCATCACGCTATGAAGCTGAAATAATACTTTCATCAGCTCGTGGACTCAAAAACGTGAACTGGCGCAACGGCTCAAACAAACCATACGGTGTCGTATGGATAGATCCAAAGAACAAATTCTCAACTAAAGTAGATGAAAACGGCGACACAGAAGCTAATTGGGATCAAACTCTCATCATCCCTTTACCACCACAACCAATTGAAGATCTTAGTCTTTACATCGACATCGTTCACGCCGGCTCGGAGCCGGACACCAAGCCACTCATTGGCTCGGCTAAACTCAAATTAGTGGAAATTCTCGACGATGTTGGGATCGGCGAGCGCACTAGCCGATCCCTCAAACTCAAAAGACCGTCGGGAAGACCACAAGGAAAACTTGATGTTAAGATAACAATTAGAGAGCCCGGCTATCGTGCACCTGCGCCAGGTGCTTATTACGCTCCACCTTATGGTGTTCCTCCACCTCAGGCATCATCGAGGAATTATAATTATAATTCCTCTGCGCCTGGGTATGGAGATCCTTACGGTGCACCGCAGCAGAATTATGGTTATTCTGCTGCGCCACCTGGAGGGTATCCTTATAATGCGGGGCCTCAAACTGCAGGGTATGGGTCGGGGTACGGATCGCAAACGACGTCGTATGGACAAGGGAGTGGTTATGGGTATGGACAAGTGGAGGAAAAGAAGAAAAGTAAGTTTGGTGGGATGGGGACAGGATTGGCTGTGGGTGCAGTTGCTGGAGTGTTAGGTGGAGTTGCGCTTGTGGAAGGTGCTGAATATCTTGAAGATAAGATTGCTGATGATGCTGCGGAGAAAGTTGAAGATGATCTTGGCTATGATGATGATGATGGTGGTTATGATGGGGATGATTTTTAG | 879 | 0.4767 | MASRYEAEIILSSARGLKNVNWRNGSNKPYGVVWIDPKNKFSTKVDENGDTEANWDQTLIIPLPPQPIEDLSLYIDIVHAGSEPDTKPLIGSAKLKLVEILDDVGIGERTSRSLKLKRPSGRPQGKLDVKITIREPGYRAPAPGAYYAPPYGVPPPQASSRNYNYNSSAPGYGDPYGAPQQNYGYSAAPPGGYPYNAGPQTAGYGSGYGSQTTSYGQGSGYGYGQVEEKKKSKFGGMGTGLAVGAVAGVLGGVALVEGAEYLEDKIADDAAEKVEDDLGYDDDDGGYDGDDF | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre11g01167 | 292 | CDD | C2_SRC2_like | 8 | 129 | IPR044750 | GO:0006952 | |
| Trre11g01167 | 292 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 7 | 135 | IPR035892 | - | |
| Trre11g01167 | 292 | PANTHER | INGRESSION PROTEIN FIC1 | 8 | 245 | - | - | |
| Trre11g01167 | 292 | MobiDBLite | consensus disorder prediction | 274 | 292 | - | - | |
| Trre11g01167 | 292 | ProSiteProfiles | C2 domain profile. | 1 | 111 | IPR000008 | - | |
| Trre11g01167 | 292 | Gene3D | C2 domain | 7 | 141 | IPR035892 | - | |
| Trre11g01167 | 292 | Pfam | C2 domain | 9 | 102 | IPR000008 | - | |
| Trre11g01167 | 292 | MobiDBLite | consensus disorder prediction | 270 | 292 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre11g01167 | Trre-Chr11 | 11179366 | 11180244 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre11g01167 | - | - | gmx:100817630 | 297.745 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre11g01167 | 11 | 11179366 | 11180244 | Trre11g01167 | 11 | 11179366 | 11180244 | ECH |