Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g00343 ATGGATAGTTCAGAAAAGGTTGTTGCTGTGATTATGGTTGGTGGACCCACCAAAGGTACTAGATTTCGACCTCTTTCATTCAATACTCCAAAACCCCTTTTTCCTTTGGCTGGACAACCAATGGTTCATCATCCTATCTCAGCTTGTAAAAGGATACCAAATTTGGCTCAAATATATCTTGTTGGATTCCATGAGGAGCGAGAATTCGCTCTATATGTCTCTTCAATTTCGAATGAGCTGAAATTACCAGTAAGATATTTGAAGGAGGATAAACCACATGGCTCAGCAGGTGGTCTTTACTACTTCAGAGATATTATTATGGAAGACAGTCCGTCACATATCTTTCTGCTAAATTGTGACGTTTGCTGCAGTTTTCCACTACCATCCATGCTTGATGCTCATATAAAGTATGGTGGAATGGGGACAATGTTGGTAATCAAGGTTTCGGCTGAATCTGCTAACCAATTTGGCGAGTTGGTGGCTGATCCAGAAACTCATGAGTTGCTGCATTATACTGAGAAACCTGAGACATTTGTTAGTGATTTGATAAATTGCGGTGTATACATTTTCACACCTGATATTTTTGCCGCCATTGAAAATGTTTCTGTGAACCGAGAAGGAAGAGCTAATATACGACGTCTTTCCAGCTTTGAAGCTCTCCAATCTGCAACAAGGACTCTTCCTAAAGATTTTGTAAGACTGGATCAAGATATTCTATCACCGCTAGCTGGAAAGAAGAAATTGTATACATATGAGACAAATGATTTCTGGGAGCAAATTAAAACTCCAGGACTGTCTTTGAAATGCTCGGAGTTGTATCTTGCTCAATTCCGGTATACTTCCCCGCATCTTTTGGCCAGTGGAGATGGTAAAAAGAATGCTAAAATTGTTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCAACTGCAAAGATTGGTCCAAATGTTTCTATCTCAGCAAATGTCCGTGTTGGTGCCGGTGTTAGGTTAATCAGTTGTATAATCTTGGACGATGTTGAAATTAAGGAAAATGCTGTAGTCATAAATTCTATTGTTGGATGGAAGTCATCACTCGGAAGATGGTCACGTGCTGATGGTGATTACAGTGCAAAGCTTGGCATAACCATTCTAGGAGAAGCTGTGACAGTTGAAGATGAGATAGTGGTGGTCAACAGCATTGTTCTTCCTCACAAGACTCTTAATGTCAGTGTGCAAGAAGAAATCATCTTATAA 1239 0.3987 MDSSEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMVHHPISACKRIPNLAQIYLVGFHEEREFALYVSSISNELKLPVRYLKEDKPHGSAGGLYYFRDIIMEDSPSHIFLLNCDVCCSFPLPSMLDAHIKYGGMGTMLVIKVSAESANQFGELVADPETHELLHYTEKPETFVSDLINCGVYIFTPDIFAAIENVSVNREGRANIRRLSSFEALQSATRTLPKDFVRLDQDILSPLAGKKKLYTYETNDFWEQIKTPGLSLKCSELYLAQFRYTSPHLLASGDGKKNAKIVGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIILDDVEIKENAVVINSIVGWKSSLGRWSRADGDYSAKLGITILGEAVTVEDEIVVVNSIVLPHKTLNVSVQEEIIL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g00343 412 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 8 412 - -
Trre11g00343 412 FunFam Mannose-1-phosphate guanyltransferase alpha 6 277 - -
Trre11g00343 412 Gene3D Hexapeptide repeat proteins 286 409 - -
Trre11g00343 412 FunFam Putative GDP-mannose pyrophosphorylase 283 409 - -
Trre11g00343 412 Pfam Nucleotidyl transferase 9 207 IPR005835 GO:0009058
Trre11g00343 412 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 356 IPR029044 -
Trre11g00343 412 CDD M1P_guanylylT_A_like_N 9 273 - -
Trre11g00343 412 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 276 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g00343 Trre-Chr11 2718914 2724855 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g00343 K00966 - fve:101314646 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g00343 11 2718914 2724855 Trre11g00343 11 2718914 2724855 ECH