Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4148g00001 ATGGTCAGGATGTTAGATATACTGGCACAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGCTGCGACAGCAGGCAATGGAGCATTTCAATGCATCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTTTGGGTATCAACCTTGCCACAGCAGACACGGTCATTATATTTGATTCTGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAAGAAGATATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCATTTGGTGATTCAAAAACTGAATGCAGAAGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTCTTTTTGATAAAAATGAACTGTCTTCAATCTTACGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGTAAGAAACGACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGATAGATGAAGAAGAACAAGGCAATGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGCAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGCATTCCAAGCANNNNNNNNNNANNNNNNTTTTACTGATATATTGTTACAAAAAATCTGTAACAATGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGTTATGCAGAGGCTGATCCATCTGAAAGGAGTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAGCGAGTTCAGAAGCGCCGCAAAGCAGAGTATTCGGCTCCTGCAGTACCAATGGTTGATGGAGCCTCTGTCCAAGTGAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTGCAGCCTAA 1002 0.3892 MVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNASGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSLFDKNELSSILRFGAEELFKEERNDEESKKRLLSMNIDEILERAEKVEEKIDEEEQGNELLSAFKVANFCNDEDDASFWSRWIKPDAAFQAXXXXXXFTDILLQKICNNEALAPRSARNIKSYAEADPSERSNKRKKKEPEPPERVQKRRKAEYSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4148g00001 333 Pfam Helicase conserved C-terminal domain 9 90 IPR001650 -
Trme4148g00001 333 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 131 IPR001650 -
Trme4148g00001 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 166 IPR027417 -
Trme4148g00001 333 SMART helicmild6 6 90 IPR001650 -
Trme4148g00001 333 CDD SF2_C_SNF 1 101 - -
Trme4148g00001 333 MobiDBLite consensus disorder prediction 263 301 - -
Trme4148g00001 333 Coils Coil 174 201 - -
Trme4148g00001 333 Gene3D - 1 204 IPR027417 -
Trme4148g00001 333 Coils Coil 120 140 - -
Trme4148g00001 333 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 287 - -
Trme4148g00001 333 MobiDBLite consensus disorder prediction 268 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4148g00001 Trme-Chr4148 25 1812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4148g00001 5 136 RAD5 or RAD16-like Gene Family AT5G43530 35.821 1.79e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4148g00001 K11367 - gmx:100808039 524.628