Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2433g00001 ATGACTAACATGAGAGAGTTAAAATCCTCGGCCTTCTCTTCCTTCAACTATGAATGGGTTTATGATGTTTTCCTCAGTTTTCGAGGAGAGGATACTCGCAAGGGTTTTACTGGAAACCTTTATAGTGCTCTTTTCGGAAAAGGAATCAACACTTTCATAGATGATCAAGAACTTAGGAAAGGAGAAGAAATCACACCAGCTCTCATGATGGCAATCCAACAATCCAGGATACTAATTGTGATTTTTTCAGAAAACTATGCATCGTCCGCTTTTTGTTTGGAAGAGCTTACAAAGATCATGGAGTGCATAAAACACGAGGGCAGGTTGGTTTTGCCAGTTTTTTTTTATCAAGTTGAGCCTTCTGATGTGCGCCATCAGAAAGGGAGCTATGCAAAAGCACTGGCCAATCATGAAAAAAAGAAAACCATTGACAAGGCAAAGATCAAACAGTGGAGGTTAGCTTTGCAAGAAGCAAGTAATTTGGTAGGTTGGCATTACAAAGACGGGTATGAATATAAGTTCATTGAGAAGATCATTCAAGAGGAGGCTCAAATGGTAGGGATTTACGGAATGGGTGGGTCAGGTAAAACAACACTTGCATTTGCTGTATACAATTCCGTTGCTGATCAATTTGATAGTCTCTGTTTTCTTAGTGATATTAGAGAAAATTCAATGAAGCGTGGGTTGGTACAACTACAGGAGACGCTTCTTTTTGAATTAACTGGGGTGAAAGATCTTAAGCTGTGCAGTTTAAATAAAGGAATTCCTATAATCAAAAGTAGGCTTCGTGGGAAAAAAGTTCTATTGATTTTGGATGATGTTAACAGTCTGGAGCAACTAAAAGCACTTGCTGGTGGACTTGATTGGTTTGGTTCTGGTAGCAGAGTTATTATAACAACAAGGGATAAGCATGTGTTGCATGTTTATGGTGTTAAAAGAGTCTATGAAGTAGAAGGGTTGAATCGTGAAGAAGCCCTTGAATTGTTTGTTTGGAATGCTTTCAAATCAAAAGAAGTTGATCCTAGTCATTTGGACATTTCAAAGAAAGTAGTACTTTATTCTAAGGGTCTTCCATTGGCTGTTGAAATAATAGAGGATACAAACTACGTTATGTCATGGGCATACTTTGCAGTGGTCGTGGCTTCGCCCCAGACTATGCTATACAG 1166 0.3885 MTNMRELKSSAFSSFNYEWVYDVFLSFRGEDTRKGFTGNLYSALFGKGINTFIDDQELRKGEEITPALMMAIQQSRILIVIFSENYASSAFCLEELTKIMECIKHEGRLVLPVFFYQVEPSDVRHQKGSYAKALANHEKKKTIDKAKIKQWRLALQEASNLVGWHYKDGYEYKFIEKIIQEEAQMVGIYGMGGSGKTTLAFAVYNSVADQFDSLCFLSDIRENSMKRGLVQLQETLLFELTGVKDLKLCSLNKGIPIIKSRLRGKKVLLILDDVNSLEQLKALAGGLDWFGSGSRVIITTRDKHVLHVYGVKRVYEVEGLNREEALELFVWNAFKSKEVDPSHLDISKKVVLYSKGLPLAVEIIEDTNYVMSWAYFAVVVASPQTMLY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2433g00001 388 PRINTS Disease resistance protein signature 185 200 - -
Trme2433g00001 388 PRINTS Disease resistance protein signature 261 275 - -
Trme2433g00001 388 PRINTS Disease resistance protein signature 354 368 - -
Trme2433g00001 388 SMART till_3 20 161 IPR000157 GO:0007165
Trme2433g00001 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 373 IPR027417 -
Trme2433g00001 388 Pfam NB-ARC domain 175 365 IPR002182 GO:0043531
Trme2433g00001 388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 365 IPR044974 GO:0006952
Trme2433g00001 388 Pfam TIR domain 21 180 IPR000157 GO:0007165
Trme2433g00001 388 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Trme2433g00001 388 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 164 IPR035897 -
Trme2433g00001 388 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Trme2433g00001 388 Gene3D - 164 313 IPR027417 -
Trme2433g00001 388 Gene3D - 2 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2433g00001 Trme-Chr2433 85 1639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2433g00001 175 363 WRKY Transcription Factor Family AT5G45050 38.342 8.95e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2433g00001 - - ccaj:109801117 478.018