Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g5024 ATGGTTCTGGCACAGTTAGGAGGGAGCATTACTCGTGCTCTTCAGCAGATGAGCAATGCAACAGTGATCGACGAGAAAGTCCTCAATGATTGTCTCAACGAAATCAATCGAGCTCTTCTTCAATCAGATGTTCGATTCGAACTCGTTCGAGACATGCGGACCAATATCAAGAAGATTGTTAATCTTCAAGATCTCGCCGCCGGTCACAACAAACGCAAAATCATTCAACAAGCTGTGTTTAACGAACTCTGCAAAATGTTGGATCCTGGAAAATCCTCTTTTGTTCCCAAAAAAGGAAAAACAAGTGTTGTCATGTTTGTTGGTTTACAAGGTTCTGGAAAAACTACGACGTGTACAAAATATGCTCATTATTATCAGAAGAAAGGATGGAAGCCGGCTTTAGTTTGTGCAGATACATTTAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCTACTAAAGCTAAAATCCCTTTTTATGGAAGTTATATGGAGTCAGATCCTGTCAAAGTTGCTGTGGAAGGTGTGGAGAGATTCAAGGAAGAAAACCGTGATCTTATAATTGTTGATACCAGTGGGAGGCACAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGCCAAGTGTCAGAAGCAACGAAACCGGATCTTGTTATATTTGTCATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTAATTATTACCAAAATGGATGGCCATGCCAAGGGTGGTGGTTCTCTTAGCGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATAGGAACTGGTGAACATATGGATGAGTTTGAAGTTTTTGAAGTTAAGCCATTTGTTAGTCGTCTATTAGGCATGGGGGACTGGTCTGGGTTTGTAGACAAAATACATGACATTGTTCCTATGGACAAACAGCCTGAATTGCTTCAAAAGTTATCAGAAGGCTTCACCTTGAGGACCTTGAGGATTATGTATGAGCAATTTCAGAACATGCTTAGTATGGGTCCTTTGAGCCAGGTCTTTTCTATGCTTCCAGGATTTAGTTCGGAGTTAATGCCAAAAGGCCAAGAGAAAGAAAGCCAGGAAAAAGTTAAGCGGTACATGACAATAATGGATTCAATGACAAATGAAGAGTTGGATAGTTCAAACCCAAAGCTTATAAATGAACCACGTATGATGCGAATAGCCCGAGGTTCTGGTCGTCTAGTTAGGGAAGTGTTAGACATGATGGAAGAGTACAAACGTCTTGCAAAGGTAATGAAACGACTTAAAATACCAAAGAAGGGTGACATGAGTGCCCTATCTCGAAATATGAATGCACAGAGCATGGCCAAAGCCCTCCCTGCACAGATGCTGAGGCAAATTGGTGGCATGGGTGGGTTACAAAACTTAATGAGGTAG 1434 0.4163 MVLAQLGGSITRALQQMSNATVIDEKVLNDCLNEINRALLQSDVRFELVRDMRTNIKKIVNLQDLAAGHNKRKIIQQAVFNELCKMLDPGKSSFVPKKGKTSVVMFVGLQGSGKTTTCTKYAHYYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKVAVEGVERFKEENRDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGSLSAVAATKSPVIFIGTGEHMDEFEVFEVKPFVSRLLGMGDWSGFVDKIHDIVPMDKQPELLQKLSEGFTLRTLRIMYEQFQNMLSMGPLSQVFSMLPGFSSELMPKGQEKESQEKVKRYMTIMDSMTNEELDSSNPKLINEPRMMRIARGSGRLVREVLDMMEEYKRLAKVMKRLKIPKKGDMSALSRNMNAQSMAKALPAQMLRQIGGMGGLQNLMR* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g5024 477 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 476 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tpr7g5024 477 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tpr7g5024 477 Gene3D - 311 451 IPR036891 GO:0006614|GO:0008312|GO:0048500
Tpr7g5024 477 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Tpr7g5024 477 Gene3D - 5 306 IPR042101 -
Tpr7g5024 477 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 429 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Tpr7g5024 477 Pfam Signal peptide binding domain 331 431 IPR004125 GO:0006614|GO:0008312|GO:0048500
Tpr7g5024 477 Gene3D - 91 285 IPR027417 -
Tpr7g5024 477 CDD SRP54_G 102 294 - -
Tpr7g5024 477 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Tpr7g5024 477 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Tpr7g5024 477 SUPERFAMILY Signal peptide-binding domain 298 434 IPR036891 GO:0006614|GO:0008312|GO:0048500
Tpr7g5024 477 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Tpr7g5024 477 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Tpr7g5024 477 SMART AAA_5 100 277 IPR003593 -
Tpr7g5024 477 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 477 - -
Tpr7g5024 477 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Tpr7g5024 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g5024 Tpr-Chr7 57847390 57852247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g5024 K03106 - csin:114313834 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g5024 7 57847390 57852247 Tpr7g5024 7 57847390 57852247 ECH
Tpr7g5024 7 57847390 57852247 Tpr4g0523 4 4974251 4979455 PCT