Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4574 ATGCCAACTATTTTACTTAGAATTTTCCTTCTATACAACGTTGTCAATTCATTTCTCATAAGTCTTGTTCCTAAGAAACTCAGAACTTTCTTCCCACATTCTTGGTTTACTCATCAAACCTTAACCAATCTCATCCAAACCACTACTATAACAAACACTTCTTCATCATCAAAAACAAGTCTTGTTATTACCAAGACAAAAACAATGGATCCAAATGAACTCAAACGTGTTTTTCAAATGTTTGATCGTAACGACGATGGCCGAATAACAAAAAAGGAGCTGAATGATTCCTTGGAGAATTTAGGAATCTTCATTCCTGACAAAGAGTTAAGTCAAATGATCGAGAAAATCGATGTTAACCAAGACGGATGTGTTGATATTGAGGAATTTAAAGAGTTGTATGAGTCTATTATGGATGAACGTGTTGAAGATGAGGAAGAAGATATGAGGGAAGCATTCAATGTGTTTGATCAAAATGGTGATGGGTTTATTAGTGTTGATGAATTGAGATCTGTTTTAGTGTCTTTGGGATTGAAACAAGGAAGAACTGTTGAAGATTGTAAGAAAATGATTGGAAATGTTGATGTTGATGGAAATGGTTTGGTTGATTATAAAGAGTTTAAGCAAATGATGAAGGGTGGTGGTTTATCTGCTCTCAGTTAG 663 0.3439 MPTILLRIFLLYNVVNSFLISLVPKKLRTFFPHSWFTHQTLTNLIQTTTITNTSSSSKTSLVITKTKTMDPNELKRVFQMFDRNDDGRITKKELNDSLENLGIFIPDKELSQMIEKIDVNQDGCVDIEEFKELYESIMDERVEDEEEDMREAFNVFDQNGDGFISVDELRSVLVSLGLKQGRTVEDCKKMIGNVDVDGNGLVDYKEFKQMMKGGGLSALS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4574 220 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Tpr7g4574 220 PANTHER BNAA04G25000D PROTEIN 6 218 - -
Tpr7g4574 220 Pfam EF-hand domain pair 73 135 IPR002048 GO:0005509
Tpr7g4574 220 Pfam EF-hand domain pair 146 212 IPR002048 GO:0005509
Tpr7g4574 220 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Tpr7g4574 220 ProSitePatterns EF-hand calcium-binding domain. 157 169 IPR018247 -
Tpr7g4574 220 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Tpr7g4574 220 SUPERFAMILY EF-hand 72 213 IPR011992 -
Tpr7g4574 220 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 218 - -
Tpr7g4574 220 Coils Coil 127 147 - -
Tpr7g4574 220 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Tpr7g4574 220 ProSiteProfiles EF-hand calcium-binding domain profile. 144 179 IPR002048 GO:0005509
Tpr7g4574 220 CDD EFh 150 212 IPR002048 GO:0005509
Tpr7g4574 220 ProSitePatterns EF-hand calcium-binding domain. 195 207 IPR018247 -
Tpr7g4574 220 SMART efh_1 186 214 IPR002048 GO:0005509
Tpr7g4574 220 SMART efh_1 109 137 IPR002048 GO:0005509
Tpr7g4574 220 SMART efh_1 148 176 IPR002048 GO:0005509
Tpr7g4574 220 SMART efh_1 73 101 IPR002048 GO:0005509
Tpr7g4574 220 Gene3D - 137 214 - -
Tpr7g4574 220 Gene3D - 35 136 - -
Tpr7g4574 220 ProSiteProfiles EF-hand calcium-binding domain profile. 182 217 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4574 Tpr-Chr7 54216041 54217491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4574 5 218 EF-hand Containing Proteins AT2G43290 64.055 2.97e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4574 K13448 - gmx:100527487 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4574 7 54216041 54217491 Tpr3g2202 3 20639630 20640790 PCT