Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4475 ATGGCAGCCTCTCAAGCAAGCCTTCTCCTTCAAAAACAGCTCAAAGATCTTTGTAAACATCCTGTTGATGGCTTTTCCGCTGGTTTGGTTGATGAAACCAATATTTTTGAATGGAGTGTAACCATAATTGGACCACCAGATACTCTTTACGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCGCCCAACTACCCAAACAGTCCACCATCAGTGAAATTCACCTCAGATATATGGCATCCCAATGTATATCCTGATGGTCGGGTTTGTATATCTATTCTTCATCCTCCTGGGGATGACCCAAATGGTTACGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTGTTGAGTATCATTTCGATGCTTTCTGGGCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCGAAGGAGTGGAGGGACAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGTTGTGTGCGGAAGTCACAGGAAATGTTGTGA 504 0.4385 MAASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSDIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4475 167 CDD UBCc 18 160 IPR000608 -
Tpr7g4475 167 Pfam Ubiquitin-conjugating enzyme 10 159 IPR000608 -
Tpr7g4475 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 3 167 - -
Tpr7g4475 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 165 IPR000608 -
Tpr7g4475 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 79 94 IPR023313 -
Tpr7g4475 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 167 - -
Tpr7g4475 167 SMART ubc_7 8 165 - -
Tpr7g4475 167 Gene3D Ubiquitin Conjugating Enzyme 2 167 IPR016135 -
Tpr7g4475 167 SUPERFAMILY UBC-like 4 163 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4475 Tpr-Chr7 53470726 53475496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4475 1 128 Miscellaneous Gene Families AT1G17280 30.147 1.85e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4475 K10575 - gmx:100782328 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4475 7 53470726 53475496 Tpr3g2059 3 18911106 18914135 PCT