Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4463 ATGGCTCGTCGTGAGCATTATGATCACCTCATAAAGCTTCTTTTGATCGGCGATAGTGGTGTTGGAAAGAGTTCTCTTCTTCTACGCTTCTCTGATAGTGTGTTTGAAACAAGTTATATTACTACCTTAGGCATTGATTTTAAAAATAGAGTCATAGAGTTGGATGGAAAAAAGATTATGCTGCAAATTTGGGATACTGCAGGTCAAGAGCGGTTCCGAACAATTACAACCGCTTACTATCGCGGTGCTATGGGCATATTGCTAGTCTATGATGTTACAAATGAATCTTCATTTAACAATATCAGGAGTTGGATTAGTAGCATTGAGCAACATTCTAAAGACAATTTTATAAACAAAATACTGGTTGGGAATAAAGCTGACATGGATGAAAGGAAAAGGGTGGTGCCTTTCTCCAAGGGCAAAGCACTAGCAAATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAGTCAAAATGTCAATGAATCTTTCTTCTCAATTGCAAGGGATATAAAACAAAGGCTTCCGGACATTGATTCTACGAAAACGCCAACAAGATTTCGAATCAACAAACAAGATAAGGCAACTTCAAAACACGGTGCACAGAAGTCGGCATGCTGTGGTTGA 633 0.3839 MARREHYDHLIKLLLIGDSGVGKSSLLLRFSDSVFETSYITTLGIDFKNRVIELDGKKIMLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTNESSFNNIRSWISSIEQHSKDNFINKILVGNKADMDERKRVVPFSKGKALANEYGIKFFETSAKTSQNVNESFFSIARDIKQRLPDIDSTKTPTRFRINKQDKATSKHGAQKSACCG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4463 210 ProSiteProfiles small GTPase Ras family profile. 1 210 IPR001806 GO:0003924|GO:0005525
Tpr7g4463 210 PANTHER LD44762P 2 210 - -
Tpr7g4463 210 SMART ras_sub_4 12 176 - -
Tpr7g4463 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 191 IPR027417 -
Tpr7g4463 210 SMART ran_sub_2 16 210 - -
Tpr7g4463 210 Pfam Ras family 12 174 IPR001806 GO:0003924|GO:0005525
Tpr7g4463 210 ProSiteProfiles small GTPase Rab1 family profile. 6 209 - -
Tpr7g4463 210 Gene3D - 4 209 IPR027417 -
Tpr7g4463 210 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 2 210 - -
Tpr7g4463 210 SMART rab_sub_5 11 176 - -
Tpr7g4463 210 PRINTS Transforming protein P21 ras signature 11 32 - -
Tpr7g4463 210 PRINTS Transforming protein P21 ras signature 34 50 - -
Tpr7g4463 210 PRINTS Transforming protein P21 ras signature 52 74 - -
Tpr7g4463 210 PRINTS Transforming protein P21 ras signature 115 128 - -
Tpr7g4463 210 PRINTS Transforming protein P21 ras signature 151 173 - -
Tpr7g4463 210 SMART rho_sub_3 13 176 IPR001806 GO:0003924|GO:0005525
Tpr7g4463 210 TIGRFAM small_GTP: small GTP-binding protein domain 10 166 IPR005225 GO:0005525
Tpr7g4463 210 ProSiteProfiles small GTPase Rho family profile. 4 174 - -
Tpr7g4463 210 CDD Rab8_Rab10_Rab13_like 8 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4463 Tpr-Chr7 53399683 53402990 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4463 K07901 - vvi:100243217 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4463 7 53399683 53402990 Tpr3g2033 3 18604827 18607818 PCT