Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4228 ATGACTAACTACGATACCAATCCCTTCGCTGAAGAAGAGGTTAATCCTTTCGCCGATGGAGTTCCTAAAGGAAAAGGTTCAGGGCGATATGGTGGAGGTGCATTCTACACTACTAACCCGGGAAGTGCAAAGCTCTCACCCCTTCCTCATGAGCCACATGATCGCGGGACAACTGTTGACATTGCTCTTGATTTGCCAAAGGACCTCAAAGCAAAGGAAAAGGAACTTCAAGCTAGAGAGGCTGAATTGAAAAGAAGAGAACAGGAGCTAAAAAGAAAGGAAGATGCTATAGCGCGAGCTGGAATAGTTATTGAGGAAAAAAATTGGCCACCTGTTTTCCCTCTCATTCATCATGACATTGCAAAGGAAATACCGATACATCTTCAAGCGATCCAATATGTTGCGTTTACAACATGGTTGGGTTTGATTTTTTGTCTGACATTTAATATTGCGGCTGTTACAGTAGCTTGGCTCAAAGGAGAAGGACTGTCAATTTGGTTTCTTTCTATCATATACTTTATTTCCGGTGTTCCTGCATCCTATGTGATGTGGTATCGTCCTCTTTATCGTGCTACGAGGACGGACAGTGCTCTTAAGTTCGGCTGGTTTTTCATATGTTACTCGTTCCACGTTCTATTTTGTGTTTTGGCTGCAGTTGCACCTCCACTTGTCTTCAAAGGAAAATCTCTCACAGGTATACTCCCTGCACTTGAGATCCTGACCTACAATCCAATGCTTGGGATACTCTACCTTGTTGGATGTGGTTTTTTCACCATTGAATCACTGCTGAGCATATGGGTTATTCAGCAAGTATACATGTACTTCCGCGGCAGTGGGAAAGCTGCGCAAATGAAACGGGAAGCTACAATGGGGGCCATGATGCATGCTCTATGA 894 0.4385 MTNYDTNPFAEEEVNPFADGVPKGKGSGRYGGGAFYTTNPGSAKLSPLPHEPHDRGTTVDIALDLPKDLKAKEKELQAREAELKRREQELKRKEDAIARAGIVIEEKNWPPVFPLIHHDIAKEIPIHLQAIQYVAFTTWLGLIFCLTFNIAAVTVAWLKGEGLSIWFLSIIYFISGVPASYVMWYRPLYRATRTDSALKFGWFFICYSFHVLFCVLAAVAPPLVFKGKSLTGILPALEILTYNPMLGILYLVGCGFFTIESLLSIWVIQQVYMYFRGSGKAAQMKREATMGAMMHAL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4228 297 Pfam SCAMP family 106 277 IPR007273 GO:0015031|GO:0016021
Tpr7g4228 297 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 297 IPR007273 GO:0015031|GO:0016021
Tpr7g4228 297 MobiDBLite consensus disorder prediction 1 25 - -
Tpr7g4228 297 Coils Coil 69 96 - -
Tpr7g4228 297 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4228 Tpr-Chr7 51253836 51258242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4228 59 297 Miscellaneous Gene Families AT2G20840 76.569 7.96e-129 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g4228 K19995 - gmx:100820206 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g4228 7 51253836 51258242 Tpr7g4228 7 51253836 51258242 ECH
Tpr7g4228 7 51253836 51258242 Tpr7g4228 7 51253836 51258242 PCT