Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3566 ATGGGAAAAAATCACTTTGAGGAATTACCTTCACATTTGATTTTGGAAATTCTATGCTCAGGGAAGCTAAGTGCAATAGACCTTGTTCGTTTGGAATTTGCTTCAAAAACTTTTGGTGTTAGAAATGACTTATGTGACTTAAAGTTTAAGTCATTGGTAGACTTAGCTGCATTTCAATTGTGTGGCTCTAATGCCACCTTTTCAATGATTGGTTTGAATTCTCAAAAGGATTTGTATGATCGATGTGGCGGAAAATGGAAGCGGGTTTTGAGGTTTTTGGAGTCTGTTGAACAATCCTCTGACATGGTTGAGACATCTTCAGGCAATATGCAAATTACGGCAGGAAAGTATCACACCTTGGCGATCAGCAATTCCTCGGTCTATTCTTGTGGTTCAAGTTTGTGTGGTGTACTTGGTCAAGGATCTGAAACAACACAGTGTTCAGCATTTACTCGAATCAACTTCCCACCTTTGGCGCGTGTGGCACATGTTTCAGCCTCCTATAACCATGCAGCTTTCGTTATGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCATCTTCGTGCTGTGGTCATAGTGATACAAATCGACCTATTTTCAGGCCACGTCTTGTTGAATCCTTAAAGGGGATTCCTTGCAAGCAGGTTGCAGCAGGGCTAAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTGTATACATGCGGAACCAACTCGCACGGCCAACTTGGTCATGGCGACGCCCAAGACAGACCAAGCCCCAAAAAGATTGAATTCCTTGGTAAAGTAGGACCTATTGTTCAAGTTGTTGCTGGACCTAGCTATATCTTATCTGTAACAGGAGATGGATCAGTATACTCCTTCGGATCAGGTGGTAATTTCTGTCTTGGCCATGGTGAGCAACATGACGAGTTACTGCCACGTTTGATACAGAAATTTAGAAGAAAAGGTACTCACGTTGTTCAAGTATCTGCTGGCGACGAGCATGCAGTGGCACTTGATTCAAATGGATTTGTATATACATGGGGGAAGGGATATTGCGGTGCTTTAGGCCATGGAGATGAGATTGAGAAAACAAGACCAGAGTTGTTGTCGAGTCTCAAGAATCACCTAGCTGTTCAGGTCTGTGCAAGAAAGAGAAAAACCTTTGTTCTACTTGATTCAGGTTTGGTCTATGGCTTTGGCTCAATGGGATTTGGCAGCCTAGGATTTTTAGACAGAAAGTTATCAGATAAAATCTTGAAACCAAGAATCTTAAACTCATTAAGATCTCACCATGTTTCTCAAATCAGCACCGGCCTCTACCACACTGCAGTAGTCACTAACCGCGGACAAATATTTGGTTTTGGCGACAACGAAAGAGCTCAACTTGGTCATGATACATTAAGAGAATGCCTTGAACCTATTGAGATTTTCATAGAAAATTCATCATCTGAAGAAGATGTTGATCCTATGTTATAA 1464 0.4173 MGKNHFEELPSHLILEILCSGKLSAIDLVRLEFASKTFGVRNDLCDLKFKSLVDLAAFQLCGSNATFSMIGLNSQKDLYDRCGGKWKRVLRFLESVEQSSDMVETSSGNMQITAGKYHTLAISNSSVYSCGSSLCGVLGQGSETTQCSAFTRINFPPLARVAHVSASYNHAAFVMQSGEVFTCGDNSSSCCGHSDTNRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGTNSHGQLGHGDAQDRPSPKKIEFLGKVGPIVQVVAGPSYILSVTGDGSVYSFGSGGNFCLGHGEQHDELLPRLIQKFRRKGTHVVQVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTRPELLSSLKNHLAVQVCARKRKTFVLLDSGLVYGFGSMGFGSLGFLDRKLSDKILKPRILNSLRSHHVSQISTGLYHTAVVTNRGQIFGFGDNERAQLGHDTLRECLEPIEIFIENSSSEEDVDPML* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3566 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 389 IPR000408 -
Tpr7g3566 487 Gene3D - 61 263 IPR009091 -
Tpr7g3566 487 Gene3D - 264 484 IPR009091 -
Tpr7g3566 487 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 6 480 - -
Tpr7g3566 487 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Tpr7g3566 487 PRINTS Chromosome condensation regulator RCC1 signature 321 334 IPR000408 -
Tpr7g3566 487 PRINTS Chromosome condensation regulator RCC1 signature 340 356 IPR000408 -
Tpr7g3566 487 PRINTS Chromosome condensation regulator RCC1 signature 431 447 IPR000408 -
Tpr7g3566 487 PRINTS Chromosome condensation regulator RCC1 signature 447 461 IPR000408 -
Tpr7g3566 487 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Tpr7g3566 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 178 230 IPR000408 -
Tpr7g3566 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 444 IPR000408 -
Tpr7g3566 487 SUPERFAMILY RCC1/BLIP-II 105 409 IPR009091 -
Tpr7g3566 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 337 IPR000408 -
Tpr7g3566 487 Pfam Regulator of chromosome condensation (RCC1) repeat 428 456 - -
Tpr7g3566 487 Pfam Regulator of chromosome condensation (RCC1) repeat 337 378 IPR000408 -
Tpr7g3566 487 Pfam Regulator of chromosome condensation (RCC1) repeat 177 227 IPR000408 -
Tpr7g3566 487 Pfam Regulator of chromosome condensation (RCC1) repeat 283 334 IPR000408 -
Tpr7g3566 487 Pfam Regulator of chromosome condensation (RCC1) repeat 231 274 IPR000408 -
Tpr7g3566 487 PANTHER BNAA01G28890D PROTEIN 6 480 - -
Tpr7g3566 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 231 283 IPR000408 -
Tpr7g3566 487 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 324 334 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3566 Tpr-Chr7 44237427 44242756 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3566 - - gmx:100782653 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3566 7 44237427 44242756 Tpr7g3566 7 44237427 44242756 ECH