Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3542 ATGGATCATGAATCCAGATTTAGAAAGCAGAAACAACAGACCATTTTTCATGATGTGATTGACCTTGAAGGTGAAACAGCTCGTAAAAGAATAAACAAGGGGAAGGCAGTGGTTCCACCATTTTTCACTGATGAAACTCTGAAGAAACTTCAAAGTTTTGAACAATTTGACATTGTCATTGACACTTCTGACCATCACTATGTTAAAAATAATAAATCCATGAAGCGAAATTCAAAGAGTTGGGCTAAAAAAATCCAGGAAGAGTGGAAGATTTTGGCGAAGCATTTGCCAAAAACAATATTTGTGAGAGTCTTCGAATCAAGGATGGATCTCTTGAGGGCTGTTATTATTGGAGCAGAAGGGACTCCTTACCATGACGGTCTTTTCTTTTTCGATGTTTTCTTTCCCAGTGGCTATCCCAATGTACCCCCGCTAGTCTACTATGACTCTAGAGGTCTTAGGCTCAACCCGAATTTGTATAAGAATGGCTATGTATGTCTTAGTCTACTTAACACTTGGAGTGGCCGCCGGAATGAGAAATGGACTCCTGGTTATTCAACAATTCTACAGGTTCTAGTCTCCATACAAGGTCTAATCTTGAATGCAAAGCCATTCTTTAATGAACCTGGATATGCAATTATGAGTGGCACACGAATTGGTGAATCATGGTCTCGAAAGTATAATGAAGATACATTCATTCTATCAGTGAGGACAATGATGTATACGATGAGAAACCCTCCAAAGAATTTTGAAGATCTTGTTGTGGGACATTTCTACAGCCGAGCACATGATATTCTAGCATCATGTAAAGCGTACGTGGAAGGTGTTCAAGTTGGTTGTTTTGTGAAAGGTGGGGATGTTGATAATGGTGGACGAAAAAGCTCTGATAATTTTAAGGCTAGTTTACTTGGATATGTCAAGCTACTTGTCCAAGATTTTGAAAAAATTGGAGTTAAGGATTGCCAGAAATTCGTTTTTCCGACTTCTCAGGAACCAACTCCTTTGAAAAATCCTTATAATTTCAATGGCCCTCATGAGCACGCGCATCCTCATGGATTAGAATCCGGAAACTCTTGGTTGAAGAGTTCTAATAATTTCAATGCCCCTCCACGGAACACACATAACGGAGCGTCTGTGGTCTCCCCAGGTTTGACGACAATCACTGATGGACCCGAAAATGAAACTCTAAGGAAACTTCAAAGTTTTAAGCAATTTGACATTGTCGTTGACACTTCCGATCATCACTTCGTTAACAATAATTCATTGGTGCCACAAGATGAGTGGAAGATTTTGGAGAAGCATTTGCCGGTCTTCGAATCAAGGATTGATCTCTTGAGGGCTGTAATTATTGGAGCAGAAGGGACTCCTTACCACGACGGTCTTTTCTTTTTCGACATTCTCTTTCCCATTGGCTATCCCAATGTACCCCCGCAAGTCCACTATCATGCTGGAGGTCTTCGGCTTAACCCGAATTTGTATGGGAATGGCAAAGTATGTCTCAGTCTACTCAACACCTGGCCTGGCAACGTGAATGAGATGTGGACTCCAGGTGTTTCAACAATGCTACAGGTTCTAGTCTCCATACAAGGTCTAATCTTGAATTCAAAGCCTTACTTTAATGAACCTGGATGTGCAAGTAAGAGTGGCACACAAAATGGTGAAGCGAAGTCCCTGAAGTATAATGAGAAAACATTCATTCTATCATTGAGGACAATGATGTATACGATAAAAAAGCCTCCAAGGAATTTTGAAGAACTTGTTGTCGGGCATTTCTACAGCCGAGCACATGATATTCTGGCGTCATGTAAAGCGTACATGGAAGGTGTTCAAGTTGGTTGTTTTGTGAAAGGTGGGCTTCGAGATGTTGATAAGGGTGGACAAAAATGTTCAGATAAATTTAAGGCTGATTTAGTTGGATATGTCAATCTTCTTGTCCAAGATTTTGAGAAACTTGGAGTTAAGGACTGCCAGAAATTAATTTCTACGACTTATCCAAAACCGCGTACTGCTGGTGGCAGATTCGCTTAA 2028 0.4058 MDHESRFRKQKQQTIFHDVIDLEGETARKRINKGKAVVPPFFTDETLKKLQSFEQFDIVIDTSDHHYVKNNKSMKRNSKSWAKKIQEEWKILAKHLPKTIFVRVFESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYPNVPPLVYYDSRGLRLNPNLYKNGYVCLSLLNTWSGRRNEKWTPGYSTILQVLVSIQGLILNAKPFFNEPGYAIMSGTRIGESWSRKYNEDTFILSVRTMMYTMRNPPKNFEDLVVGHFYSRAHDILASCKAYVEGVQVGCFVKGGDVDNGGRKSSDNFKASLLGYVKLLVQDFEKIGVKDCQKFVFPTSQEPTPLKNPYNFNGPHEHAHPHGLESGNSWLKSSNNFNAPPRNTHNGASVVSPGLTTITDGPENETLRKLQSFKQFDIVVDTSDHHFVNNNSLVPQDEWKILEKHLPVFESRIDLLRAVIIGAEGTPYHDGLFFFDILFPIGYPNVPPQVHYHAGGLRLNPNLYGNGKVCLSLLNTWPGNVNEMWTPGVSTMLQVLVSIQGLILNSKPYFNEPGCASKSGTQNGEAKSLKYNEKTFILSLRTMMYTIKKPPRNFEELVVGHFYSRAHDILASCKAYMEGVQVGCFVKGGLRDVDKGGQKCSDKFKADLVGYVNLLVQDFEKLGVKDCQKLISTTYPKPRTAGGRFA* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3542 675 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 80 240 IPR000608 -
Tpr7g3542 675 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 39 328 - -
Tpr7g3542 675 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 381 662 - -
Tpr7g3542 675 CDD UBCc 83 229 IPR000608 -
Tpr7g3542 675 SUPERFAMILY UBC-like 426 580 IPR016135 -
Tpr7g3542 675 Gene3D Ubiquitin Conjugating Enzyme 392 651 IPR016135 -
Tpr7g3542 675 Gene3D Ubiquitin Conjugating Enzyme 43 317 IPR016135 -
Tpr7g3542 675 SMART ubc_7 401 573 - -
Tpr7g3542 675 SMART ubc_7 83 229 - -
Tpr7g3542 675 CDD UBCc 427 565 IPR000608 -
Tpr7g3542 675 Pfam Ubiquitin-conjugating enzyme 85 228 IPR000608 -
Tpr7g3542 675 Pfam Ubiquitin-conjugating enzyme 439 552 IPR000608 -
Tpr7g3542 675 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 39 328 - -
Tpr7g3542 675 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 381 662 - -
Tpr7g3542 675 SUPERFAMILY UBC-like 65 247 IPR016135 -
Tpr7g3542 675 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 411 573 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3542 Tpr-Chr7 43988025 43996134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3542 383 660 Miscellaneous Gene Families AT2G33770 45.946 1.56e-72 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3542 K10581 - gmx:100810772 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3542 7 43988025 43996134 Tpr7g3542 7 43988025 43996134 ECH