Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3481 ATGTCTCTCTCTTTCACTTCCCCACCTCGTTCCCGCCGGCGTCACCACCGCCACAACCACCGCACACCGTTCCTCTTCCTTTTCCTCGGCATAGTCACAATCCTATTCACTCAATCACACGCTCGCTTATTTACTCGCGATCTAATTTCCGATGGTTCCAACTTTCTCCGTCTTCCAACAGATTTACGAGAAGAATCCACCTGTGAACAGACCTACGGTTTCTTACCATGCACCACAACCGTTTTCGGTAACTTGTTCCTTATCATTGTTTATGGATTCCTCATGTACACTGCTGCTACTTTCTTATCTAATGGTAGTGAACTCTTGCTTGAGATCTTGGGTCCTGGCATTGTTGGTGGCTTGTTTCTTCCTATTCTTGGTGCTCTCCCTGATGCCATGCTCATCCTCGTATCTGGGCTTTCAGGAAGTCCCGAAGTTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGATCAACAGTGCTGCTTCTCACTATAATATGGGGGACTTGTGTAATTGTAGGCAAGTGTGACATTGAGGATTCAATTGCATTAGATTCAACAGACACTAGGGGATTCCATTTAACTGGTTCTGGTGTTAGTACTGATATTTGGACAAGTTATGCTGCAAGGATTATGATTATATCCGTCATTCCATTTTTGATTGTTCAATTACCACAGATTCTCCATTCAACTTCTGGAAGGCACTTGGCTGTTTTGATTGGTTTTGTTGTCTCTGTCTGTTTATTGATCTCTTATTGCCTTTACCAGATTTTCCAGCCCTGGATACAAAAGAGAAAATTGGAATATATTAAACACAAGCATGTTATTGTGGGACTTTTGAGACATTTGAAGATGCGTTCATTGGGAAGGCTGCTAAATGATGATGGTACACCGAATAAAGAAGTAATTAAAAAGTTGTTTGCAACCATTGATGAAAATAAAGATGGGCATCTTACTCACGGTGAAATGACAGCACTAGTTGTTGGAATTCAATTTGAGGAGATTGACTTGGAGCACGATGATGCTGTGAGAAGAATAATGGCAGATTTTGATACTTCTCGTAATCAACTTATTGATGAAGAAGAATTTGTTACTGGAGTCTGTAGATGGCTTCAAGCAGCGGGGCGTTCTCGTGCTCCAGCTGGTGATGCTGGTTCACACACTGTGAAGTTTTTAAGCGATTTTCACACAGAAACAAAGAGGGAACACGATCTTCTAGATGTCGGGGGTCACGGTGATGAAGTCTCTGAGGGTGTAGAGAATGCTAAATGGATTTCCATCAAAGCAGGATTATTCCTGTTACTAGGTTCTCTTATTGCTGCTGCATTTGCTGATCCTTTGGTTGATGTAGTTGATAACTTTTCTGATGCTACAAGTATTCCAGCTTTCTTCATTTCCTTCATTTTTCTACCTCTTGCAACCAATTCAAGTGAAGCAGTATCGGCAATAATTTTTGCTAGTCGTGATAAGAGGCAAACAGCATCATTAACATTTTCTGAGATATATGGTGCAGTAACGATGAACAATGTGCTATGTCTATCGGTCTTCTTGGCACTCGTATATGTGAGGGGTTTGACATGGGACTTTTCTTCAGAAGTGTTGGTTATTCTCATCGTTTGCATTGTCATGGGTGCCTTCGCCAGTTTCCGGACGGTTTTCCCTCTATGGACATCAATAATAGCTATCCTGCTTTATCCTTTCTCCCTGGCATTGGTCTATGTTCTTGATTATCAATTTGGGTGGTCATAG 1758 0.4198 MSLSFTSPPRSRRRHHRHNHRTPFLFLFLGIVTILFTQSHARLFTRDLISDGSNFLRLPTDLREESTCEQTYGFLPCTTTVFGNLFLIIVYGFLMYTAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSPEVAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIALDSTDTRGFHLTGSGVSTDIWTSYAARIMIISVIPFLIVQLPQILHSTSGRHLAVLIGFVVSVCLLISYCLYQIFQPWIQKRKLEYIKHKHVIVGLLRHLKMRSLGRLLNDDGTPNKEVIKKLFATIDENKDGHLTHGEMTALVVGIQFEEIDLEHDDAVRRIMADFDTSRNQLIDEEEFVTGVCRWLQAAGRSRAPAGDAGSHTVKFLSDFHTETKREHDLLDVGGHGDEVSEGVENAKWISIKAGLFLLLGSLIAAAFADPLVDVVDNFSDATSIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILIVCIVMGAFASFRTVFPLWTSIIAILLYPFSLALVYVLDYQFGWS* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3481 585 SMART efh_1 345 373 IPR002048 GO:0005509
Tpr7g3481 585 SMART efh_1 305 333 IPR002048 GO:0005509
Tpr7g3481 585 ProSiteProfiles EF-hand calcium-binding domain profile. 301 336 IPR002048 GO:0005509
Tpr7g3481 585 SUPERFAMILY EF-hand 301 375 IPR011992 -
Tpr7g3481 585 ProSitePatterns EF-hand calcium-binding domain. 314 326 IPR018247 -
Tpr7g3481 585 ProSiteProfiles EF-hand calcium-binding domain profile. 341 376 IPR002048 GO:0005509
Tpr7g3481 585 Gene3D - 254 381 - -
Tpr7g3481 585 Pfam EF-hand domain pair 303 368 IPR002048 GO:0005509
Tpr7g3481 585 CDD EFh 306 370 IPR002048 GO:0005509
Tpr7g3481 585 PANTHER SODIUM/CALCIUM EXCHANGER NCL 33 582 - -
Tpr7g3481 585 ProSitePatterns EF-hand calcium-binding domain. 354 366 IPR018247 -
Tpr7g3481 585 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 33 582 IPR004713 GO:0006812|GO:0008324|GO:0016021
Tpr7g3481 585 Gene3D - 421 579 IPR044880 -
Tpr7g3481 585 Pfam Sodium/calcium exchanger protein 86 262 IPR004837 GO:0016021|GO:0055085
Tpr7g3481 585 Pfam Sodium/calcium exchanger protein 434 576 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3481 Tpr-Chr7 43275138 43281790 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3481 59 585 EF-hand Containing Proteins AT1G53210 70.056 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3481 - - gmx:100809896 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3481 7 43275138 43281790 Tpr7g3481 7 43275138 43281790 ECH