LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g3446	ATGGCAAACAAAATGGAAAAAATGGCATCAATTGATGCACAGCTTAGACAATTAGTACCAGCAAAAGTTAGTGAAGATGATAAACTTATTGAGTATGATGCTTTGTTGTTGGATCGGTTTCTTGATATTCTTCAGGATTTACATGGAGAGGATCTGAAAGATTCTGTTCAAGAAGTGTATGAACTTTCTGCGGAGTACGAAAGAAAGCATGATCCTAAGAAACTTGAAGAACTTGGAAATTTGATAACAAGTTTAGATGCAGGAGATTCAATTGTTGTTGCCAAGTCCTTTTCACACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTTCAGATTGCTCATCGCCGAAGGAACAAGTTGAAGAAAGGTGATTTTAGGGATGAGAGCAATGCAACTACCGAATCAGACATCGAAGAAACTCTCAAGAGACTTGTGTTTAACATGAAGAAATCTCCTCAGGAAGTTTTTGATGCATTGAAGAACCAGACCGTTGATCTGGTTCTTACTGCTCATCCTACTCAGTCAGTTCGTCGATCTTTGCTTCAAAAGCATGCAAGGGTAAGGAACTGTTTATCACAATTGTATGCTAAAGACATCACTCCTGATGATAAGCAAGAGCTCGATGAAGCTCTCCAGAGGGAGATCCAAGCTGCATTCCGTACCGATGAAATCAAGAGGACTCCTCCAACACCACAAGATGAGATGAGAGCAGGGATGAGTTACTTCCATGAAACAATTTGGAAGGGTGTCCCTAAATTTCTTCGCCGTGTTGATACTGCGTTGAAGAACATAGGGATTAACGAACGTGTTCCCTATAATGCTCCTCTTATTCAGTTTTCTTCTTGGATGGGGGGTGATCGTGATGGTAATCCGAGAGTGACTCCGGAAGTGACGAGAGATGTTTGCTTACTAGCTAGAATGATGGCTGCAAATTTGTATTATTCTCAGATTGAAGATCTTATGTTTGAACTGTCTATGTGGCGTTGCAATGATGAGCTACGTGATCGTGCGGAAGAACTTCACAGGAATTCCAAGAAAGATGAAGTTGCAAAACACTACATAGAGTTTTGGAAAAAAATTCCTTTGAATGAACCGTACCGTGTTATACTCGGTGATGTAAGGGACAAGCTCTATCGTACTCGTGAGAGGTCTCGTTATCTTCTAGCTCATGGCTATTCTGAAATTCCTGAAGAAGCCACATTCACCGATGTTGATGAGTTCTTGGAACCTCTTGAACTATGCTACAGATCACTCTGTGCTTGTGGTGATCGTGCGATTGCTGATGGAAGCCTTCTTGATTTCTTGAGGCAAGTTTCCACTTTTGGACTGTCGCTGGTAAGACTTGATATTAGGCAAGAGTCAGATCGCCACACGGACGTGATGGACGCCATTACCAAACATTTGGAAATTGGATCCTACCAAGAATGGTCTGAAGAAAAAAGACAGGAATGGCTTTTGTCTGAGTTGGTTGGCAAAAGGCCACTTTTTGGACCTGACCTACCTCAAACTGATGAAATTAGAGAAGTTTTAGAGACATTTCATGTCATAGCAGAACTTCCATCAGACAACTTTGGAGCCTATATCATTTCGATGGCAACTGCCCCATCTGATGTGCTAGCGGTTGAACTTCTTCAACGTGAATGCAAAATCAAGAATCCGTTAAGAGTTGTTCCATTGTTTGAGAAACTTGCTGATCTTGAGTCTGCTCCTGCTGCCTTGGCTCGGTTGTTCTCGATAGATTGGTACATAAACCGGATCAATGGGAAGCAAGAAGTTATGATTGGATATTCTGATTCAGGTAAAGATGCTGGAAGGTTTTCTGCAGCATGGCAGCTATATAAGGCTCAGGAGGACCTCATAAGCGTTGCTCAGAAATTCGGTGTTAAGCTAACAATGTTCCACGGTCGTGGTGGAACTGTTGGAAGAGGAGGTGGACCTACTCATCTTGCTATCTTGTCTCAACCACCAGACACAATTCATGGATCGCTTCGTGTGACGGTTCAAGGTGAAGTTATTGAACAGTCGTTCGGAGAGGAACACTTGTGCTTTAGAACACTGCAACGTTTCACTGCTGCCACTCTAGAACACGGAATGCGTCCCCCAAGTTCTCCAAAACCAGAATGGCGTGCATTGATGGACCAGATGGCTGTCATTGCTACTGAGGAGTACCGTTCAATTGTGTTCAAGGAACCACGTTTTGTTGAGTATTTCCGTCTGGCTACACCAGAGATGGAGTACGGAAGGATGAACATTGGAAGTCGACCGGCAAAGAGAAGGCCTAGCGGAGGCATCGAAACACTGCGTGCGATACCATGGATTTTTGCATGGACACAGACAAGATTTCATCTTCCAGTATGGCTAGGTTTCGGAGCAGCTTTTAAACAAGTTGTTGCGAAGGATGTTAAGAATCTTCATATGCTGCAAGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTTGAAATGGTGTTTGCTAAGGGTGACCCTGGTATTGCAGCACTGAATGATAGGCTCCTAGTTTCACAGGATCTATGGCCATTTGGTGAACAGTTGAGAAGCAAGTACGAAGAAACTAAGAAACTCCTACTTCAGGTGGCTACACACAAGGAAGTTCTTGAAGGAGATCCCTACTTGAAACAAAGACTCAGACTCCGTGATTCATACATTACAACCCTTAACGTTTTCCAAGCTTACACATTGAAACGGATCCGGGATCCAAACTATAAGGTGGAGGTACGCCCCCGCGTATCGAAAGAGTCTGCTGAAACAAGTAAATCGGCCGATGAACTTGTAACATTGAATCCAACAAGTGAATATGCTCCTGGTTTGGAAGACACACTCATTCTCACCATGAAGGGTATTGCTGCTGGCATGCAGAACACTGGTTAA	2901	0.4316	MANKMEKMASIDAQLRQLVPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKDSVQEVYELSAEYERKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFRDESNATTESDIEETLKRLVFNMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARVRNCLSQLYAKDITPDDKQELDEALQREIQAAFRTDEIKRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRDRAEELHRNSKKDEVAKHYIEFWKKIPLNEPYRVILGDVRDKLYRTRERSRYLLAHGYSEIPEEATFTDVDEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYQEWSEEKRQEWLLSELVGKRPLFGPDLPQTDEIREVLETFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECKIKNPLRVVPLFEKLADLESAPAALARLFSIDWYINRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDLISVAQKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPSSPKPEWRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPEMEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVVAKDVKNLHMLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSQDLWPFGEQLRSKYEETKKLLLQVATHKEVLEGDPYLKQRLRLRDSYITTLNVFQAYTLKRIRDPNYKVEVRPRVSKESAETSKSADELVTLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*	967

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g3446	966	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	167	178	IPR018129	-
	Tpr7g3446	966	Hamap	Phosphoenolpyruvate carboxylase [ppc].	22	966	IPR022805	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 2.	592	604	IPR033129	-
	Tpr7g3446	966	PRINTS	Phosphoenolpyruvate carboxylase signature	166	179	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	PRINTS	Phosphoenolpyruvate carboxylase signature	219	235	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	PRINTS	Phosphoenolpyruvate carboxylase signature	279	294	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	PRINTS	Phosphoenolpyruvate carboxylase signature	441	461	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	PRINTS	Phosphoenolpyruvate carboxylase signature	590	610	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	PRINTS	Phosphoenolpyruvate carboxylase signature	632	661	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	PRINTS	Phosphoenolpyruvate carboxylase signature	764	790	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	Gene3D	Phosphoenolpyruvate/pyruvate domain	307	444	-	-
	Tpr7g3446	966	MobiDBLite	consensus disorder prediction	918	937	-	-
	Tpr7g3446	966	Pfam	Phosphoenolpyruvate carboxylase	34	966	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	32	966	IPR015813	GO:0003824
	Tpr7g3446	966	Coils	Coil	330	350	-	-
	Tpr7g3446	966	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	966	-	-
	Tpr7g3446	966	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	966	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Tpr7g3446	966	Coils	Coil	103	123	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g3446	Tpr-Chr7	42741927	42747679	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g3446	K01595		-	gmx:100805069	1783.46

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr7g3446	7	42741927	42747679	Tpr7g3446	7	42741927	42747679	ECH