Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3343 ATGGCAACGCACACCCCAAAAAATATCCTGATTACCGGGGCAGCGGGATTCATTGCATCTCATGTTGCCAATCGGCTAATCCGGAATTATCCTGACTACAAGATTGTTGTGCTCGACAAACTTGATTACTGTTCTAATCTGAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGAGACATTGCAAGTGCTGATCTTGTCAACTACCTTCTCATTACCGAGTCTATCGACACAATTATGCACTTTGCCGCTCAAACTCATGTGGACAACTCTTTTGGTAATAGTTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCTTGTTAGAAGCCTGCAAGGTAACGGGACAGATCAAAAGGTTCATCCATGTAAGCACTGACGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTCGGAAACCATGAAGCTTCTCAGCTACTTCCGACAAATCCATACTCTGCAACTAAAGCTGGGGCGGAAATGCTTGTCATGGCCTATGGTAGGTCGTATGGACTTCCTGTGATCACAACACGTGGAAACAATGTCTATGGCCCGAACCAGTTTCCTGAAAAGCTAATTCCAAAGTTCATCCTCTTGGCAATGCAAGGCAAAGTTCTTCCGATTCATGGTGATGGTTCAAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAGGTTATCCTTCATAAGGGAGAGGTTGGACATGTTTACAATATTGGAACAAAGAAGGAAAGGCGTGTTATTGATGTAGCCACTGATATATGCCGACTCTTCTCGATAGATCCGGAGACTAATATAAAGTTTGTAGAGAACAGACCGTTTAATGACCAGAGATACTTTCTTGATGACGAAAAGTTGAAGGTTTTGGGTTGGTCGGAGAGAACAACGTGGCAAGAAGGCTTGAAGAAAACCATGGATTGGTATATCAACAATCCTAATTGGTGGGGTGATGTGAGCGGTGCATTACTTCCTCACCCAAGGATGTTGATGATGCCTGGTGGTATGGAGAGACATTTCGATGGATCTGAAGAAGAAAATTCTGCAACATATGTCTCAAGTACGAACACTCGAATGGTGGTTCCACCAACCAAGAACCCTGGCTCATTGCAGAAACCTCCTCTCAAGTTCTTGATCTATGGCAGAACAGGTTGGATCGGTGGTCTGTTGGGGAAACTGTGTGAGAAGCAAGGGATTCCTTATGAGTATGGAAAAGGGCGCCTTGAGGATCGTTCGTCACTCGTGGCTGATATTCAGAACGTGAAGCCAACTCATATTTTCAATGCAGCAGGAGTGACTGGAAGACCTAATGTTGATTGGTGTGAATCTCATAAAACTGAAACCATCCGTGTCAACGTTGCTGGGACTTTAACATTGGCTGATGTAAGCAGAGAGCATGACCTTTTGATGATAAACTATGCTACTGGATGCATATTCGAGTACGATGAAGCTCATCCAGAAGGTTCAGGCATTGGTTTTAAGGAGGAAGACACACCTAATTTCAGTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAAGAGCTTTTGAAAGAATATGACAATGTGTGCACTCTTAGGGTTCGCATGCCGATATCATCTGACCTAAGCAATCCGCGCAACTTCATCACCAAGATTTCACGTTACAACAAAGTAGTTAACATTCCAAACAGCATGACTATTTTGGACGAACTTCTTCCTATTTCAATTGAGATGGCAAAGAGGAACTTAAGGGGTATCTGGAACTTCACAAATCCTGGTGCCGTGAGCCACAACGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGGCTAACTTCACACTTGAAGAGCAAGCCAAAGTGATAGTTGCTGCAAGAAGCAACAATGAAATGGATGCATCCAAATTGAAGAGTGAGTTTCCAGAATTGCTTTCCATCAAGGAATCACTGATCAAGAATGTCTTTGAGCCAAACAAGAAAAGCGCTTAA 2013 0.4297 MATHTPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIASADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKVLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVATDICRLFSIDPETNIKFVENRPFNDQRYFLDDEKLKVLGWSERTTWQEGLKKTMDWYINNPNWWGDVSGALLPHPRMLMMPGGMERHFDGSEEENSATYVSSTNTRMVVPPTKNPGSLQKPPLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRVNVAGTLTLADVSREHDLLMINYATGCIFEYDEAHPEGSGIGFKEEDTPNFSGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWANFTLEEQAKVIVAARSNNEMDASKLKSEFPELLSIKESLIKNVFEPNKKSA* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3343 670 Gene3D - 9 313 - -
Tpr7g3343 670 CDD dTDP_HR_like_SDR_e 386 658 - -
Tpr7g3343 670 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Tpr7g3343 670 Pfam RmlD substrate binding domain 386 556 IPR029903 -
Tpr7g3343 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 333 IPR036291 -
Tpr7g3343 670 Gene3D - 379 670 - -
Tpr7g3343 670 Gene3D - 200 322 - -
Tpr7g3343 670 PANTHER BNAC05G13120D PROTEIN 2 667 - -
Tpr7g3343 670 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Tpr7g3343 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 384 656 IPR036291 -
Tpr7g3343 670 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3343 Tpr-Chr7 41587618 41591566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3343 8 324 Miscellaneous Gene Families AT4G00110 27.729 1.91e-22 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g3343 K12450 - gmx:100789909 1298.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3343 7 41587618 41591566 Tpr7g3343 7 41587618 41591566 ECH