Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2167 ATGGGTGGATCACATTCAAAACGGAGAAGCTCTAGGCAACTTTCTTCATCCTCGAGATCAAATCCGCTGTTTCCGCAGTATCAATCACCTTATCTACCACAAACACAAGATCATGGAGCAATGGGGTATAATTATGGGGCTCCACCTCCACCTCAAAACTATGGTAGTGGTGGTAGTCATGCTTCTCAACAAAGCAAGAGATCAGATAAGAAGTATACAAGGATAGATGATAACTATAATAGTTTGGAACAGGTAACTGAAGCTCTAGCAAGTGCTGGCCTGGAGTCTTCCAATCTCATTGTTGGTATCGATTTTACAAAGAGCAATGAGTGGACAGGTGCACGCTCATTCCAAAGGAAATGCCTGCATCACATCGGGCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTGTCATCCTTTGATGAGGATAACTTGATTCCCTGCTTTGGATTCGGAGATGCGTCAACACATGACCAGGAAGTTTTTAGTTTCAATGATGATGATAGATTTTGTCATGGATTTGAAGAAGTGCTGACACGGTATAGGGAATTGGTTCCTCAATTAAGGCTTGCAGGACCCACATCATTCGCCCCAATCATTGAGATGGCAATCACCATAGTTGAGCAAAGTAAAGGCCAATACCATGTTTTATTGATTATAGCAGATGGGCAGGTGACAAGAAGTGTTGACACTGATCATGGACAATTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTAAAAGCTAGTGAATATCCCCTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCATGGGACATGATGAAACAATTTGATGACAACATACCTGCTCGAGCATTCGATAATTTCCAGGTATGTTCAAAGCATATTCTGTTTATACTTTTAATAATGATTCTAAACTTATTTTTCCTTTCTCTTTTGCTTTGTCTTGTGCAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACACAGATCGGTCTAGAAAGGAAGCCGAGTTTGCACTTTCTGCCTTGATGGAAATACCTTCCCAGTACAAGGCAACACTAGAACTTAATATATTGAGCAATCGTAGAAGGAATGGCGATATACACAGGATTCCTCTACCACCACCTCAATATGGTGCATCATCATTCAACACCCCAAAGGTTTCCCATCAAAACAGTTTTCGTCCCAGTGCACCGTCTCAAAAACAGAGTGTTGGCACGAACCCCCATGCAAGTTCTGCTTCTGATAATCAGTTTTGTCCCATTTGCCTCTCCAATCCGAAGGATATGGCCTTTGGTTGCGGGCATCAGACTTGCTGCGAGTGCGGCCAAGATCTTCAGTTATGCCCTATTTGCAGGAGTAGCATTGATACTAGAATAAAGCTTTATTAG 1401 0.4133 MGGSHSKRRSSRQLSSSSRSNPLFPQYQSPYLPQTQDHGAMGYNYGAPPPPQNYGSGGSHASQQSKRSDKKYTRIDDNYNSLEQVTEALASAGLESSNLIVGIDFTKSNEWTGARSFQRKCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFNDDDRFCHGFEEVLTRYRELVPQLRLAGPTSFAPIIEMAITIVEQSKGQYHVLLIIADGQVTRSVDTDHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQVCSKHILFILLIMILNLFFLSLLLCLVQFVNFTEIMSKNTDRSRKEAEFALSALMEIPSQYKATLELNILSNRRRNGDIHRIPLPPPQYGASSFNTPKVSHQNSFRPSAPSQKQSVGTNPHASSASDNQFCPICLSNPKDMAFGCGHQTCCECGQDLQLCPICRSSIDTRIKLY* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2167 466 ProSiteProfiles Zinc finger RING-type profile. 423 456 IPR001841 -
Tpr7g2167 466 SMART VWA_4 96 306 IPR002035 -
Tpr7g2167 466 MobiDBLite consensus disorder prediction 1 35 - -
Tpr7g2167 466 PANTHER RING-FINGER PROTEIN 319 466 - -
Tpr7g2167 466 PANTHER RING-FINGER PROTEIN 1 293 - -
Tpr7g2167 466 Pfam Copine 121 292 IPR010734 -
Tpr7g2167 466 Pfam Copine 319 363 IPR010734 -
Tpr7g2167 466 CDD RING-HC_RGLG_plant 423 466 IPR045317 GO:0061630|GO:0070534
Tpr7g2167 466 MobiDBLite consensus disorder prediction 394 413 - -
Tpr7g2167 466 PANTHER COPINE FAMILY PROTEIN 1 1 293 - -
Tpr7g2167 466 PANTHER COPINE FAMILY PROTEIN 1 319 466 - -
Tpr7g2167 466 SUPERFAMILY vWA-like 98 280 IPR036465 -
Tpr7g2167 466 Pfam Zinc finger, C3HC4 type (RING finger) 420 461 - -
Tpr7g2167 466 SUPERFAMILY RING/U-box 417 462 - -
Tpr7g2167 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 466 IPR013083 -
Tpr7g2167 466 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2167 Tpr-Chr7 28324362 28328451 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2167 K16280 - gmx:100809850 677.552