Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2137 ATGGGTTTGGGGAAACCCGAACTTTATGGGTTTGAGTTTGGGGAGGGCAAAACCCGTCTCCGCCCCATTGCCATGCCTGATAATTACACTTACGCTTGTGTTATACGTGCATGCTCTGATAACTTTGATTTTCGTATGACTTGTCATGGAAATTCTCTGTCTGCAGGATTGGGAATGAACCCTATTTGTTGTAGTGCACTTGTCAGTGCTTATTCAAAACTTGGCTTTGTTCATGAAGCTTGTAGAGTGTTCAATGGGATTGCTGAACCGGATTTAGTTTTGTGGTATTCTTTGATTTCTGCTTATGTGTGTTCTGGTATGTGGGATATAGGGATTCAAATGTTTAGCTCAATGAGACATTCTGGGAAGAAGCCTGATGGGTTTACATTGGCTAGGGTGGTTGTGGGTATTGCGGATTCTAGCTTGCTGAGCATTGGCCAAGGATTACATTGTTTGAGTCAAAAGAGTGGGCTTGATTATGATTCTCATGCAGGTAGTTTACTGGTGCGTATGTACTCGAGATGTAAGTGCATGGATTCAGCATATAGAGTCTTTTGTAGCATTTTCAATCCTGATTTGGTTACATGGTCTGCTCTAATAGCTGGGTATTCTCAGTGTGGGGAGTATCAGAAAGTGTTGCTCTATTTCAGGAAAATAAACATGGAGAGCAAGAAGCCGGATTCTGTTTTGATTGCCACTGTGCTGGCTTCTATAGCTCAGACGGCAATTGTAGTACCAGGATATGAGGTACATGGTTATGTTCTTCGGCATGGACTGGAATCAGATGTCAAGGTTTCCTCTGCTCTCATAGATATGTATTCCAAGTGTGGTTTCCTGCACTTGGGAACTCGTGCGTTTAAGATAATGCCAGAACGTAATATAATTTCTTATAATTCAGTAATTTTGGCTCTTGGCTTGTACGGATGTGCTTGAGGCTTCGCGATGTTTGATGAGATAATGGAGAGAGGATTGGTACCTGATGAAGCAACATTATCTGCTCTCCTTTGTGCTTGTTGTCATGCTGGCTTGGTTAAAGATGGCCGAGAGATTTTCCGGAGAATGAAAGAGGAATTCAACATCAAAGCTAGACCTGAGCACTATGTTTACATGGTGAAGCTTCTTGGCAGTGCTGGGGGGTTAGAAGAGGCCTACAATCTCACTCAGTCCTTACCAGAACCAGTAGACAAGGCCATATTGGGAGCCTTATTATCATGCTGTGATTTTTATGGAAATTCCAAGTTGGCAGAAACTGTAGCTCAGCAGATTTTTAAAAGCGATCCTTCTGACAATGTTTACAAGGTTATGCTTTCCAAATATGCTGGCGATGGGAGGTGGGATGATGCGAAGAAATTGAGGGATAAAATGACAGGAGGTCAAAAGAAAATTCGAGGAGTTAGTTGA 1401 0.4247 MGLGKPELYGFEFGEGKTRLRPIAMPDNYTYACVIRACSDNFDFRMTCHGNSLSAGLGMNPICCSALVSAYSKLGFVHEACRVFNGIAEPDLVLWYSLISAYVCSGMWDIGIQMFSSMRHSGKKPDGFTLARVVVGIADSSLLSIGQGLHCLSQKSGLDYDSHAGSLLVRMYSRCKCMDSAYRVFCSIFNPDLVTWSALIAGYSQCGEYQKVLLYFRKINMESKKPDSVLIATVLASIAQTAIVVPGYEVHGYVLRHGLESDVKVSSALIDMYSKCGFLHLGTRAFKIMPERNIISYNSVILALGLYGCA*GFAMFDEIMERGLVPDEATLSALLCACCHAGLVKDGREIFRRMKEEFNIKARPEHYVYMVKLLGSAGGLEEAYNLTQSLPEPVDKAILGALLSCCDFYGNSKLAETVAQQIFKSDPSDNVYKVMLSKYAGDGRWDDAKKLRDKMTGGQKKIRGVS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2137 465 Gene3D Tetratricopeptide repeat domain 149 242 IPR011990 GO:0005515
Tpr7g2137 465 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 25 465 - -
Tpr7g2137 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 356 IPR002885 -
Tpr7g2137 465 Gene3D Tetratricopeptide repeat domain 313 463 IPR011990 GO:0005515
Tpr7g2137 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Tpr7g2137 465 PANTHER OS01G0545900 PROTEIN 25 465 - -
Tpr7g2137 465 Gene3D Tetratricopeptide repeat domain 243 312 IPR011990 GO:0005515
Tpr7g2137 465 Gene3D Tetratricopeptide repeat domain 20 148 IPR011990 GO:0005515
Tpr7g2137 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Tpr7g2137 465 TIGRFAM PPR: pentatricopeptide repeat domain 94 126 IPR002885 -
Tpr7g2137 465 TIGRFAM PPR: pentatricopeptide repeat domain 329 356 IPR002885 -
Tpr7g2137 465 TIGRFAM PPR: pentatricopeptide repeat domain 194 224 IPR002885 -
Tpr7g2137 465 Pfam PPR repeat 329 356 IPR002885 -
Tpr7g2137 465 Pfam PPR repeat 63 85 IPR002885 -
Tpr7g2137 465 Pfam PPR repeat 431 454 IPR002885 -
Tpr7g2137 465 Pfam PPR repeat 93 122 IPR002885 -
Tpr7g2137 465 Pfam PPR repeat 194 219 IPR002885 -
Tpr7g2137 465 Pfam PPR repeat 267 294 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2137 Tpr-Chr7 27630341 27632236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2137 27 454 Glycoside Hydrolase AT3G49170 28.767 2.71e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g2137 - - gmx:100820049 692.189