Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1132 ATGGCCATGGTTATGGCTTCTTTCCGCATTGTATTACACACCAACACCTATAATCGCTTCTTCCATCCACCAACTCTTTCCACGTGGCGGCGGTGTCTTCTTTTTTCTCGTGCATTTTCAACTAATTACAATTACAGCGTTGTTGTAAAGAAAGACGAACGGTTAGGGAAACGAACTGAGAATGAGAACTCCAATGTTGTAAACTCGACAACAATTGCAGCCATAGTAACATCTTTAGGTGGTCCTCCTGCTGCTGTTGGAATCGTTCGTCTTTCGGGTCCTCACGCGGTGTCTATTGCGGGTCGAGTATTTCGACCCGCCGTCAGAAACACGTGGCAGCCTACTAGTCATGTTGTTGAATACGGCGTTGTTTTGGATTCGGATGGAAATGTTATCGATGAGGTTTTAGCAGTGCCTATGCTAGCACCGAGATCGTATACTCGGGAAGATGTTGTTGAACTTCAATGTCATGGGAATGAAGTGTGTTTGCGTCGTGTGCTTAGGACTTGTTTGGAAGCTGGAGCAACACTTGCTCAGCCAGGAGAGTTTACTCTTCGTGCTTTTCTAAATGGTCGTTTGGATCTGTCCCAAGCTGAAAATGTTGCAAGACTGATCTCAGCTAAATCTATGGCTGCCGCTGATGCAGCGCTGGAAGGAATTCAGGGTGGTTTCTCTTCTCTTGTCAGGTCATTGAGAAATCAGTGCATCGATATGCTCACTGAGATTGAAGCTCGTTTGGATTTCGAAGATGAGATGCCACCTCTAGATTTGAATGGGATTATGGATAAAATACAACATATGTCACAAGATGTTGAGAATGCATTGGAAACGGCAAATTATGACAAGCTTCTTCAATCTGGATTACAGTTAGCAATTGTTGGCCGTCCTAATGTCGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACTGAAATTGCTGGAACAACTCGAGATGTGATTGAAGCAAGTATTAGCATCAACGGCATTCCCATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTGGAAAAAATTGGTGTAGAGCGATCTGAAGCTGTTGCCAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCGGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTGCTAAGGAATCAACTGGATCTTCCACCCCAGTAATCCTCGTGGTCAACAAGATAGATTGTAAGCCTAGTGCTGAGACTGAATGGGACAAAGGATGTCACAGTCACAAAATTTTCAGCAAACAAGTGTTTACATGTGCTGTAACCAGTCAAGGAATACAAGACTTAGAGAGGGCAGTTTTAGAGATTGTGGGTATGGATGGCATTGCTGCTGGGGGTCGCAGATGGACTGTAAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCGCTTGTGAGGTTACAATCATCAATAAAGGAGGAACTACCTATGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAATGGAGAAGATATTTCGGAGGAAGTTTTATCAAATATATTTAGCAAGTTCTGTATTGGTAAATAA 1611 0.4339 MAMVMASFRIVLHTNTYNRFFHPPTLSTWRRCLLFSRAFSTNYNYSVVVKKDERLGKRTENENSNVVNSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVFRPAVRNTWQPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGNEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLISAKSMAAADAALEGIQGGFSSLVRSLRNQCIDMLTEIEARLDFEDEMPPLDLNGIMDKIQHMSQDVENALETANYDKLLQSGLQLAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISINGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKESTGSSTPVILVVNKIDCKPSAETEWDKGCHSHKIFSKQVFTCAVTSQGIQDLERAVLEIVGMDGIAAGGRRWTVNQRQCEQLVRTKEALVRLQSSIKEELPMDFWTIDLRDAALSLGQINGEDISEEVLSNIFSKFCIGK* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1132 536 Gene3D Probable tRNA modification gtpase trme; domain 1 57 192 IPR027266 GO:0005515
Tpr7g1132 536 Hamap tRNA modification GTPase MnmE [mnmE]. 70 536 IPR004520 GO:0003924|GO:0005525|GO:0006400
Tpr7g1132 536 Pfam 50S ribosome-binding GTPase 290 410 IPR006073 GO:0005525
Tpr7g1132 536 TIGRFAM small_GTP: small GTP-binding protein domain 289 420 IPR005225 GO:0005525
Tpr7g1132 536 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 287 457 IPR031168 -
Tpr7g1132 536 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 69 536 - -
Tpr7g1132 536 Gene3D tRNA modification GTPase MnmE domain 2 193 536 IPR027368 -
Tpr7g1132 536 Gene3D - 288 464 IPR027417 -
Tpr7g1132 536 CDD trmE 285 457 IPR031168 -
Tpr7g1132 536 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 84 536 IPR004520 GO:0003924|GO:0005525|GO:0006400
Tpr7g1132 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 452 IPR027417 -
Tpr7g1132 536 PANTHER TRNA MODIFICATION GTPASE GTPBP3 69 536 - -
Tpr7g1132 536 Pfam MnmE helical domain 195 533 IPR025867 -
Tpr7g1132 536 Pfam GTP-binding protein TrmE N-terminus 71 192 IPR018948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1132 Tpr-Chr7 11136426 11141305 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1132 K03650 - gmx:100818096 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1132 7 11136426 11141305 Tpr7g1132 7 11136426 11141305 ECH