Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1115 ATGGATTCTCAAGCGGGTTTATCTCTAGGGTTGAATGCTTCCATGCAATCATCTACTGGTTCTTCAACTGCTTCACATAGTGATAATTCTCTTTCTTTGAATTTGAATTATAGATCAAATTCAAAATCAACTGCTTCACATTCACATGGTCTTGCATGGTGTTTAATTCCTGAAAAACAACCAGAGAATAATGTTGTTGTTGTTGTTAAGAAACGTGAACATGAGGAAGATGAAGATGGGGTTGTTGACGGTGAAGGAGAAGGTGAAACTACTATTAATTTTATGGGTAGGACTGTTTGTGTGAAGAGGAAGATAGAGGAGTGTCAACAAAGTTTTCCGGTGAAGCGTGTTGCCGTGGATTCGAAGTTGTCTGTGAGTTGGGGGAATCAGCCATTGAGTGTTGCTGATCCTGAAATTCATAGAATTATGGAGAAGGAGAAGTTGAGACAGTTTAAAGGGATTGAATTAATTGCTTCTGAGAATTTTGTGTGCAGGGCTGTGATGGAAGCACTTGGTAGTCATTTGACTAACAAGTATTCCGAGGGGATGCCGGGTGCTAAATACTATACTGGTAATCAGTACATTGATCAGCTTGAGTTTCTTTGTTGTGAACGTGCGTTGAATGCTTTTGGTCTTGATTCAAATAATTGGGGTGTTAATGTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTTTATACTGGTCTTTTGAATCCTGGTGATAGGATTATGGGTTTGGATTCGGCTTCTGGTGGACATCCGAGTCATGGTTATTATACTCCTGGTGGGAAGAAGGTTTCTGCTGCTTCTATTTTCTTTGAGACTTTGTCTTATAAGGTGAATCCTTTGACTGGTTACATTGATTATGATAAGCTTGAGGAGAAAGTGGTGGATTATAGACCTAAGATACTTATCTGTGGTGGTAGTTCTTATCCTAGAGAATGGGATTATGTGAGGTTTAGGAAGATTGCTGATAAATGTGGAGCTATTCTGATGTGTGACATGGCTCATATTGGTGGTCTTGTTGCGGCTAAGGAAGTTGCTAGTCCATTTGAATACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTTAGAGGTCCAAGAGGAGGTATCATCTTTTACAGAAAAGGGCCAAAACCAAGAAGGCAAGGCTTTGTTCTTAATCACGGAGACGATAGCACTTATGATTTTGAGGAGAAGATAAACTTTGCTTTGTATCCATCATTGCAAGGAGGTCCCCACAATAATCACATTGCTGCTCTTGCTATAGCTTTGAAACAGGTTTCAACTCCAGAGTATAAAGCATACATGCAGCAGGTGAAGAGAAATGCACAGGCATTAGCAATTGCATTGTTGAGACGAAAATGCAGATTGGTAACTGATGGGACTGACAATCATCTTTTGCTCTGGGACATAACTGCACTTGGCTTAATTGACAGAAACTATGAGAAGGTCTGCGAGGCGTGTCACATCACTCTCAATAAGTGTGCCATTTATGGTTCTATTTCTTCTGGAGGAGTGAGAATCGGCACTCCAGCAATGACATCAAGGGGCTGTGTAGAGGACGATTTTGAGGCAATAGCTGATTTTCTTTTTAGGGCAGCTCAGATTACCAGCATTATACAGAGGGAACATGGTAAATCATGCAAAGATTTTCTCAAGGGTCTTCAGAATAATAAAGATATTTTTGATCTCAGAAATCGTGTCGAGACATTTGGTTCCCAATTCGAAATGCCAGGATTCACTTATTGA 1758 0.3999 MDSQAGLSLGLNASMQSSTGSSTASHSDNSLSLNLNYRSNSKSTASHSHGLAWCLIPEKQPENNVVVVVKKREHEEDEDGVVDGEGEGETTINFMGRTVCVKRKIEECQQSFPVKRVAVDSKLSVSWGNQPLSVADPEIHRIMEKEKLRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQLEFLCCERALNAFGLDSNNWGVNVQPYSCTSANFAVYTGLLNPGDRIMGLDSASGGHPSHGYYTPGGKKVSAASIFFETLSYKVNPLTGYIDYDKLEEKVVDYRPKILICGGSSYPREWDYVRFRKIADKCGAILMCDMAHIGGLVAAKEVASPFEYCDIVTSTTHKSLRGPRGGIIFYRKGPKPRRQGFVLNHGDDSTYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVSTPEYKAYMQQVKRNAQALAIALLRRKCRLVTDGTDNHLLLWDITALGLIDRNYEKVCEACHITLNKCAIYGSISSGGVRIGTPAMTSRGCVEDDFEAIADFLFRAAQITSIIQREHGKSCKDFLKGLQNNKDIFDLRNRVETFGSQFEMPGFTY* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1115 585 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 103 583 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr7g1115 585 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 103 583 - -
Tpr7g1115 585 Hamap Serine hydroxymethyltransferase [glyA]. 131 582 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr7g1115 585 Pfam Serine hydroxymethyltransferase 133 532 IPR039429 -
Tpr7g1115 585 Gene3D Aspartate Aminotransferase, domain 1 136 581 IPR015422 GO:0003824
Tpr7g1115 585 CDD SHMT 136 540 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Tpr7g1115 585 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 356 372 IPR019798 GO:0030170
Tpr7g1115 585 SUPERFAMILY PLP-dependent transferases 128 583 IPR015424 -
Tpr7g1115 585 Gene3D - 161 440 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1115 Tpr-Chr7 10894697 10900579 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1115 K00600 - gmx:100776419 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1115 7 10894697 10900579 Tpr7g1115 7 10894697 10900579 ECH