Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1109 ATGGAAAACGCCGACGTTTTCTTAGGTTTACACGACTTCCTTGAGCGCATGCGCCAACCCGCCGCCGCCGATTTCGTCAAAGCAATCAAAAGTTTCATAGTTTCGTTTTCAAATAATGGTCCCGATCCTGATAGAGACAGTGCCGCCGTTCAAGACTTTCTTGCTAACATGGAAGCTGCTTTCAAGGCTCATCCACTTTGGTCCGGTTGCTCTGAGGATGAACTCGAAAGTGCCGGTGAAGGTCTTGAGAAGTATGTCATGACGAAGTTGTTTGCCCGTGTATTTGCTTCACTTCCAGATGATGTAAAACTTGATGACCAACTTTCGGAGAAGATGTCTTTGATTCAACAGTTTATTCGACCAGAAAATTTGGACATCAAGCCAGCATTTCAGAACGAAACATCATGGTTGCTTGCACAGAAAGAATTACAAAAGATTAACATGTACAAGGCACCCAGAGACAAACTTATTTGTATCCTAAACTGTTGCAAGGTTATTGGCAACTTGCTGCTTAATGCTTCCCTTGCTTCCAAAGATAATCCTCCCGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTTACGTTAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACGGCAATCTCGTTTGGTTGGGGAAGCATCATATTATTTTACAAATATGCTTTCTGCCGAATCCTTCATCTCAAACATTGATGCAAAAGCCATTTCGATAGATGAAACTGAGTTTGAGAGAAACATGGAATTTGCTCGTGCTCTTCTTTCAGGGCTTTCAGTTGATACGCAAGATCCCAATTCACCTTATCAAAATCATGGACAGCATCCAAGAGCAGACAAAAATAAAACTTTGAATGACAATAAGGACCCTGCATTACGAACTTCGTCATCCGCTGCAAAATTAGAAAGTAAGAAAGTGTCGTTTCAAGATGAGTTATCGATCACAAAAGTTCCATCCCTCTCAGATTTGGAGAATAAAGGGGCAAGTATGATCATAAAAGAGGATAAACTGAATGATGTTTTCAGGGAGTTTCCATATTTATTTGCTAGTGTAGGTGATCTAACAGTAGGTGATGTCGAAGACCTGCTAAATAATTACAAACAATTAGTTTTCAAGTATGCGTCTCTTTCCAAAGGGTTAGGTGTCTCTTCTACATCTCACCTTCCATCCAATCCTCAAAATAATGCTCAGCAGGACCATGCTGAAACCCTTGCCAAAGGGCTAGGCGTCTTGGCTTCATCTCAAAGTGATGCTCAGAACCATGATGAAACCACGATAGATTCTTCAGACAGCGGACCTGTAGCTTCCAATGACAAACCAGAAAAATCTACGGACACATCAGATGATAACTCTCCTAAGGAGAAAAAAAGTGATTCAGGTTTGCCACAGGATGAGGCAGTTGCATCAGAGGGCGTTGCTCCCTCTTAA 1452 0.4167 MENADVFLGLHDFLERMRQPAAADFVKAIKSFIVSFSNNGPDPDRDSAAVQDFLANMEAAFKAHPLWSGCSEDELESAGEGLEKYVMTKLFARVFASLPDDVKLDDQLSEKMSLIQQFIRPENLDIKPAFQNETSWLLAQKELQKINMYKAPRDKLICILNCCKVIGNLLLNASLASKDNPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRRQSRLVGEASYYFTNMLSAESFISNIDAKAISIDETEFERNMEFARALLSGLSVDTQDPNSPYQNHGQHPRADKNKTLNDNKDPALRTSSSAAKLESKKVSFQDELSITKVPSLSDLENKGASMIIKEDKLNDVFREFPYLFASVGDLTVGDVEDLLNNYKQLVFKYASLSKGLGVSSTSHLPSNPQNNAQQDHAETLAKGLGVLASSQSDAQNHDETTIDSSDSGPVASNDKPEKSTDTSDDNSPKEKKSDSGLPQDEAVASEGVAPS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1109 483 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Tpr7g1109 483 MobiDBLite consensus disorder prediction 449 469 - -
Tpr7g1109 483 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Tpr7g1109 483 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Tpr7g1109 483 Gene3D VPS9 domain 99 265 IPR037191 -
Tpr7g1109 483 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 409 IPR045046 GO:0005085|GO:0016192
Tpr7g1109 483 MobiDBLite consensus disorder prediction 269 306 - -
Tpr7g1109 483 Gene3D - 17 97 - -
Tpr7g1109 483 MobiDBLite consensus disorder prediction 423 448 - -
Tpr7g1109 483 SMART vps9_2 135 255 IPR003123 -
Tpr7g1109 483 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Tpr7g1109 483 MobiDBLite consensus disorder prediction 423 483 - -
Tpr7g1109 483 PANTHER BNAC09G47180D PROTEIN 1 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1109 Tpr-Chr7 10809746 10814009 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1109 K20131 - gmx:100810958 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1109 7 10809746 10814009 Tpr7g1109 7 10809746 10814009 ECH