Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1082 ATGGATTTTAACCAAATCCAATTAGCTTTGCGTTGTTGCATTCGCTTTCGATCAATTAAAAATGCCAAATCACTCCATTCTTACATAATTAAATCCGGTCATTTTAATCAAGTTTTTCTCTTAAACAACATGATCTCTGTTTATGCAAAGTGTTACAGTTTCAATGATGCACGTAACCTATTCGACGAAATGCCTCATAGGAACATAGTTTCTTGGACAACAATGGTCTCTGCATTCACCAATTCCGGCATGCCCCATGAAGCTCTTAAGCTCTACAACGAGATGCTGGAATCCAAAACTGAACAACCTAATCAGTTTTTGTATTCTGCGGTTCTCAAAGCGTGTGGTCTCGCGGGAAATGTTGAATTGGGCAAGTTGGTTCATGACCATATATGTCAATCTAAGTTAGATGTTGATATTGTTTTGATGAATGCCCTTTTGGATATGTACGTCAAATGTGGGAGCTTGATGGATGCTCAACGACTTTTCTACGAAATCCCGTTTAAAAATGCTACTTCATGGAACACCCTCATTTTGGGTCATGCTAAACAAGGCTTGATTGGTGATGCGATGAAACTGTTTGATAAAATGGCAGAACCGGATATTATATCTTGGAATAGCATCATTGCTGGCCTTGTAGATCATGCTAGTGCCCATGCGTTGCAATTTGTTTCTATGATGCATGTGAAGGGTCTTAAGTTGGATGAATTCACATTCCCGAATGCCCTCAAAGCTTGCGGTCTTGGTGATGAGTTAATGTTAGGGAGAGAGATTCATTGTTATATTATTAAGTCGGGTTTTGAGTCTAGCTGTTATTGTATATCAGCATTGATTGATATGTATTCGAATTGCAAGCTATTGGGTGAAGCAATTAAGATTTTTGATCAATTCTTCAGGAACTCTCCTGTTTCTGAAAGCTTGGCGCTTTGGAATTCTATGCTTTCTGGGTATCTTGCTAGTGGAGATTATGTTGAGGCTCTCAGTTTGATTGCTCATATGCATCATGCTGGTGTACATTTTGATTTTTATACCTTTAGTACTGTTTTAAAGATCTGCATCTACTTCCAAAACTCGTGTTTGGCATCTCAAGTGCACGGTTTGGTTATCACTAGTGGCTATGAGTTAGATTGTGTTATTGGGAGCATTCTTATTGATTTATATGCAAAACAGGGCAATATTAACAATGCATTAAGATTGTTTGAGAGGTTACCAGATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGCTGGTTGTGCTAGATTCGGTTCAGATAAGTTAGCCTTTTCTCTTTTCATGGATATGATTCATTTGGGTCTTCAGATTGACCATTTTGTTATTTCAATTGTTCTAAAAGCTTGTTCAAGTTTGGCATCTCATCAACGTGGCAAGCAAGTTCATGCTTTGTGTCTTAAGAAGGGGTATGAAGCAGAGAGAGTAATTACAACTGCTCTAATTGATATGTATGCAAAGTGTGGTGACATCGACGATGCCTTAGCTTTGTTTGGTTGTCTTTCAGAAATTGATACCATGAGTTGGACAAGTATTATTGTGGGATGTGCACACAATGGAAGAGCAGATGAGGCCATTAGTCTTCTGCATAAGATGATAGAATCTGATACAAAGCCAAACAAAATCACCATTCTAGGTGTTCTTACTGCTTGTAGGCATGCTGGCCTAGTTGAAGAGGCATGGGCTGTGTTTAATTCTATTGAAACAAAACATGGATTGATACCATGCCCAGAACACTACAATTGTATGGTTGATATACTTGGTCAAGCAGGGCGTTTTGAAGAAGCAGGAAAATTGATTAGTGAAATGCCATTTAAGCCGGACAGAACTATATGGTCTTCATTGCTTGGTGCCTGTGGAACTTACAAGAACCGACATCTGGCAAATATTGTTGCTGAGCATCTCCTTGCTGCCTCGCCAGAAGATGTTTCTGTATACACAATGCTGTCAAATGTTTATGCAGCTCTTGGAATGTGGGACAGTTTAAGCAAAGTCAGAGAAGCTGTCAAAAAAGTAGGCAAAAAAGAAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 2070 0.3894 MDFNQIQLALRCCIRFRSIKNAKSLHSYIIKSGHFNQVFLLNNMISVYAKCYSFNDARNLFDEMPHRNIVSWTTMVSAFTNSGMPHEALKLYNEMLESKTEQPNQFLYSAVLKACGLAGNVELGKLVHDHICQSKLDVDIVLMNALLDMYVKCGSLMDAQRLFYEIPFKNATSWNTLILGHAKQGLIGDAMKLFDKMAEPDIISWNSIIAGLVDHASAHALQFVSMMHVKGLKLDEFTFPNALKACGLGDELMLGREIHCYIIKSGFESSCYCISALIDMYSNCKLLGEAIKIFDQFFRNSPVSESLALWNSMLSGYLASGDYVEALSLIAHMHHAGVHFDFYTFSTVLKICIYFQNSCLASQVHGLVITSGYELDCVIGSILIDLYAKQGNINNALRLFERLPDKDVVAWSSLIAGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQRGKQVHALCLKKGYEAERVITTALIDMYAKCGDIDDALALFGCLSEIDTMSWTSIIVGCAHNGRADEAISLLHKMIESDTKPNKITILGVLTACRHAGLVEEAWAVFNSIETKHGLIPCPEHYNCMVDILGQAGRFEEAGKLISEMPFKPDRTIWSSLLGACGTYKNRHLANIVAEHLLAASPEDVSVYTMLSNVYAALGMWDSLSKVREAVKKVGKKEAGKSWIEISS* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1082 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Tpr7g1082 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Tpr7g1082 689 Gene3D Tetratricopeptide repeat domain 482 689 IPR011990 GO:0005515
Tpr7g1082 689 Gene3D Tetratricopeptide repeat domain 217 360 IPR011990 GO:0005515
Tpr7g1082 689 TIGRFAM PPR: pentatricopeptide repeat domain 583 606 IPR002885 -
Tpr7g1082 689 TIGRFAM PPR: pentatricopeptide repeat domain 309 340 IPR002885 -
Tpr7g1082 689 TIGRFAM PPR: pentatricopeptide repeat domain 42 70 IPR002885 -
Tpr7g1082 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 101 IPR002885 -
Tpr7g1082 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 543 IPR002885 -
Tpr7g1082 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 197 IPR002885 -
Tpr7g1082 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Tpr7g1082 689 Gene3D Tetratricopeptide repeat domain 361 467 IPR011990 GO:0005515
Tpr7g1082 689 Gene3D Tetratricopeptide repeat domain 120 216 IPR011990 GO:0005515
Tpr7g1082 689 Gene3D Tetratricopeptide repeat domain 2 119 IPR011990 GO:0005515
Tpr7g1082 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Tpr7g1082 689 Pfam PPR repeat 511 538 IPR002885 -
Tpr7g1082 689 Pfam PPR repeat 142 166 IPR002885 -
Tpr7g1082 689 Pfam PPR repeat 275 296 IPR002885 -
Tpr7g1082 689 Pfam PPR repeat 482 504 IPR002885 -
Tpr7g1082 689 Pfam PPR repeat 582 606 IPR002885 -
Tpr7g1082 689 Pfam PPR repeat 173 198 IPR002885 -
Tpr7g1082 689 Pfam E motif 625 686 IPR046848 -
Tpr7g1082 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 83 - -
Tpr7g1082 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 83 684 - -
Tpr7g1082 689 SUPERFAMILY TPR-like 47 329 IPR011990 GO:0005515
Tpr7g1082 689 Pfam PPR repeat family 67 115 IPR002885 -
Tpr7g1082 689 Pfam PPR repeat family 309 351 IPR002885 -
Tpr7g1082 689 Pfam PPR repeat family 406 454 IPR002885 -
Tpr7g1082 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Tpr7g1082 689 SUPERFAMILY TPR-like 86 664 IPR011990 GO:0005515
Tpr7g1082 689 PANTHER BNAC03G28070D PROTEIN 83 684 - -
Tpr7g1082 689 PANTHER BNAC03G28070D PROTEIN 38 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1082 Tpr-Chr7 10449134 10453088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1082 1 687 Glycoside Hydrolase AT3G49170 30.372 1.59e-112 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1082 - - mtr:MTR_3g072900 1186.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1082 7 10449134 10453088 Tpr7g1082 7 10449134 10453088 ECH