LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g0704	ATGGGTCACGTTGGTTCAAGCAAAGACGCACACAAGCTCAATATCAACGATGTTGATCTAGAATACGACACAGAAATGGAGGACATTGACCTAGACGAAGATCCATCAACGAATTCAGAAATCCTCAACGAAGTAGGTCCTGATATGGTGAAGTATTTCTGCAAAAAAGCTTCGGTGATGTTTTTCGACGAATATGGTTTAATCAGTCATCAAATCAACTCGTATAATCAATTTATCAGTTCTGGTCTTCAAGATGCTTTCAATTCGTTTGGAGATCTCGCTGTTACTCCTGGTTTTGATCCTTCTAAGAAAGGAGATAACGAGCATTATCGTTATGCGACTGTGAAATTTGGAAATGTAACCCTTGATCGACCTAAGTTTTGGTGTGGTGAAGGTAATGCTCAAGAGTTGAAGATGCTTCCGAGGCATGCTAGGTTGCAGAGAATGACTTATGCTTCTAAAATGAAAGTTGAGGTTCAAGTTCAGGTTTATATTCCGAAGAAGGTTCGGAGTGACAAATTTAAGACTGGGAAGGAGGAGTATATTGATAGGGAGATTATCATGGATGAGAAGAGAGAAATAACTATTGGGAGACTTCCTGTTATGGTTATGTCTGATTTATGTTGGATGAGTGAAGCTGAAAAAGGTGATTGTGAATTTGACCATGGAGGTTACTTTCTCATCAAGGGTGCTGAGAAGATTTTTATTGCACAGGAGCAGATATTTCTGAAGAGGCTCTGGGTTTCAAATATTCCGTATTGGGCAGTTGCATACAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAATTGGTGGAAAATTCCACTTTTGAAGGAATTAAAAACGGAGAGAAGATGCTGACAGTATATTTTCTGTCTGTGGAGATTCCTGTATGGATACTGTTTTTTGCTCTTGGTGTCACTTCAGATAAAGAGATTGTTGATCTCATTGATTATGAAGTGGGAGATGGAAGAGTTGACAACATTCTCTTTGCATCCATTCGGGAGGCCGATGAGAAGTGCGAAACATTTCGCAGGGGAAAGAATGCACTTCTTTTCTTAGAGGAACGTGTAAAAGGTGTCCAATTTCCACCACCCGAATCTATTGACGAGTGCCTTGACATGTATGTCTCGAGCATTAAAGGGTTAAAAAGAAAGGCACGGTACCTGGCATACATGGTGAAAGTTCTCTTGCTGGCATATACTGGCCGCCGAAAAACTGATAACAGGGACGACTTTCGAAATAAGAGGCTTGAGTTGGCTGGTGAGCTGCTCGAGCGTGAGATTAAAGTACATTTTGCACATGCTCGGAAGCGGATGGGGAAGGCTCTGCAGAGAGATCTTTATGGAGATCGAGATGTTCGTCAAATTGAGCACTATCTTGATGCTTCCATTATTACAAATGGTCTCCAAAGAGCGTTTTCTACTGGAGCATGGACACATCCTTTTAAAAGGATGGAAAGGATTTCTGGTGTGGTTGCAACTCTTGGCCGAACAAATCCACTGCAAACCATGGCTGAATTAAGAAGAACAAGGCAACAGGTTCAGTACACAGGAAAAGTTGGGGATGCTAGATACCCGCATCCTTCACACTGGGGGAAGGTTTGTTTCCTGTCTACCCCTGATGGTGAAAATTGTGGACTGGTAAAAAATTTGGCTGTCACAGGAGTGGTAAGTACCAATGTGACAGAACCGATACTTCCTCAGCTGTTCGATTGTGGAATGGAAGAACTTGTTGATGATACTACCACTGTTCTTGGAAGAAAAGACAAAGTCTTCCTAAATGGGGACTGGGTTGGAATTTGTTCAGATTCCACATCATTTGTAACAGAGCTACGAAACAGAAGACGGAAAAATGAATTGCCTCATCAGGTGGAAATCAAAAGAGACCAAAATCAACGAGAAGTGCGTATATTATCTGATGCGGGAAGGATTCTCCGTCCACTCTTGGTAGTTAGTAATCTGCTTAAGATTAAAGGATCTAAATCGGACCATAAATCTTTCAAGTCCTTACTGGACAATGGCGTGATTGAGCTGATTGGTCCTGAAGAAGAAGAGGATTTCAAGACTGCTTGGAGTGTTCAGTATTTATTTGGCAAAGAGGGAAAGTCTTCTGTGAAGTACACGCATTGTGAGCTGGATATGTCATACTTGTTGGGCCTAAGCTGTTCACTTGTTCCATTTGCAAACCATGACCATGCAAGGAGAGTGTTGTATCAATCCCAGAAGCATTCTTCACAGGCTATTGGCTATTCTACGACTAACCCCAATATAAGAGTTGATGCTTTGTCTCACCAATTATTTTATCCTCAAAGACCACTTTTTCAGACAATGGCATCTGATTGTCTTGGAAAACCTGGATATCTAGGTACAAGTAAAGTTCTTCCGAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTCGGATATAATCAAGAAGATTCCTTGGTGATGAACCGTGCTTCTTTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAAGCTGAAATTGAAAATAAGGAATCTTCTGATAAGAGAAAGAAACCTGAAGACATAGTAAACTTTGGAAAGATACAGAGTAAAATTGGTCGAGTTGATAGCCTTGATGAGGATGGCTTTCCATTTGTTGGTGCGAATTTGCAGAGTGGTGATATTATTATTGGGCGGTGTGCTGATTCAGGGACAGACCACAGTATAAAATTAAAACACACCGAAAGGGGTTATGTTCAAAAGGTTGTGCTGTCTTCTAATGATGAGGGGAAGAATTTTGCGACTGTTTCGTTAAGACAGGTTCGAAGTCCTGTACTTGGAGATAAGTTCTCCAGTATGCATGGACAGAAGGGGGTTTTAGGATTTCTTGAGTCTCAGGAAAATTTTCCTTTCACAAAACAAGGTATTGTTCCTGATATCGTCATAAATCCACATGCATTTCCCTCGCGACAAACTCCTGGGCAACTCCTAGAAGCTGCTTTAGGAAAAGGTATTGCTTGTGTTGGTTCACTGAGAAATGCTACTCCTTTCTCCACTTCCTCTGTTGAAGCAATTACTAACCAGCTTCACAGAGCTGGCTTTTCAAGATGGGGGAATGAACGAGTATATAATGGGAGGACTGGTGAGGTGGTCCGCTCACTCATATTTATGGGGCCAACATTCTACCAGCGATTGCACCACATGTCTGAGGACAAGGTCAAATTCAGGAACACTGGTCCAGTTCACCCACTGACTCGACAGCCTGTTGCTGACAGGAAGCGATTTGGAGGTATCAAGTTTGGTGAGATGGAGCGTGATTGCCTGATAGCTCATGGTGCATCGGCCAACCTATACGAACGACTCTTCACCCTGAGTGATTCATCACAGATACACATTTGCAGTAAATGCAAAAATGTAGCAAATGTGATCTTGCGACCAGTATCTGGTGGCCGGAAAATTCGAGGTCCCTATTGCCGTTTCTGTGAGTCAGCTGATGATATTGTGGTGGCCAGTGTTCCATATGGAGCTAAATTGTTGTCTCAGGAGCTGTTCAGCATGGGCATCAACCTCAAGTTTGAAACTGAGCTTTGCTAG	3591	0.4213	MGHVGSSKDAHKLNINDVDLEYDTEMEDIDLDEDPSTNSEILNEVGPDMVKYFCKKASVMFFDEYGLISHQINSYNQFISSGLQDAFNSFGDLAVTPGFDPSKKGDNEHYRYATVKFGNVTLDRPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVEVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDEKREITIGRLPVMVMSDLCWMSEAEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVSNIPYWAVAYKSQMKRNRMVVKLVENSTFEGIKNGEKMLTVYFLSVEIPVWILFFALGVTSDKEIVDLIDYEVGDGRVDNILFASIREADEKCETFRRGKNALLFLEERVKGVQFPPPESIDECLDMYVSSIKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFAHARKRMGKALQRDLYGDRDVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTNVTEPILPQLFDCGMEELVDDTTTVLGRKDKVFLNGDWVGICSDSTSFVTELRNRRRKNELPHQVEIKRDQNQREVRILSDAGRILRPLLVVSNLLKIKGSKSDHKSFKSLLDNGVIELIGPEEEEDFKTAWSVQYLFGKEGKSSVKYTHCELDMSYLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGYSTTNPNIRVDALSHQLFYPQRPLFQTMASDCLGKPGYLGTSKVLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSDKRKKPEDIVNFGKIQSKIGRVDSLDEDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFATVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITNQLHRAGFSRWGNERVYNGRTGEVVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFETELC*	1197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g0704	1196	Pfam	RNA polymerase Rpb2, domain 2	281	419	IPR007642	GO:0003677\|GO:0003899\|GO:0006351
	Tpr7g0704	1196	Pfam	RNA polymerase Rpb2, domain 6	723	1093	IPR007120	GO:0003677\|GO:0003899\|GO:0006351
	Tpr7g0704	1196	PANTHER	DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED	36	1193	-	-
	Tpr7g0704	1196	PANTHER	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	36	1193	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Tpr7g0704	1196	Gene3D	RNA polymerase alpha subunit dimerisation domain	1080	1194	-	-
	Tpr7g0704	1196	Pfam	RNA polymerase Rpb2, domain 5	668	714	IPR007647	GO:0006351
	Tpr7g0704	1196	Gene3D	-	724	1079	IPR037033	GO:0003677\|GO:0003899\|GO:0006351
	Tpr7g0704	1196	ProSitePatterns	RNA polymerases beta chain signature.	946	958	IPR007121	GO:0003677\|GO:0003899\|GO:0006351
	Tpr7g0704	1196	Gene3D	-	60	241	-	-
	Tpr7g0704	1196	Gene3D	-	407	640	-	-
	Tpr7g0704	1196	Gene3D	-	754	942	IPR014724	GO:0003899
	Tpr7g0704	1196	Pfam	RNA polymerase Rpb2, domain 3	496	555	IPR007645	GO:0003677\|GO:0003899\|GO:0006351
	Tpr7g0704	1196	SUPERFAMILY	beta and beta-prime subunits of DNA dependent RNA-polymerase	51	1194	-	-
	Tpr7g0704	1196	Pfam	RNA polymerase Rpb2, domain 7	1095	1193	IPR007641	GO:0003677\|GO:0003899\|GO:0006351
	Tpr7g0704	1196	Pfam	RNA polymerase Rpb2, domain 4	592	652	IPR007646	GO:0003677\|GO:0003899\|GO:0006351
	Tpr7g0704	1196	Gene3D	RNA polymerase Rpb2, domain 2	250	406	IPR037034	GO:0003677\|GO:0003899\|GO:0006351
	Tpr7g0704	1196	CDD	RNA_pol_B_RPB2	67	1192	IPR015712	GO:0003899\|GO:0006351\|GO:0032549
	Tpr7g0704	1196	Pfam	RNA polymerase beta subunit	66	455	IPR007644	GO:0003677\|GO:0003899\|GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g0704	Tpr-Chr7	6251589	6258026	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g0704	-		K16252	gmx:100815934	2008.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr7g0704	7	6251589	6258026	Tpr7g0704	7	6251589	6258026	ECH