Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0600 ATGGGTACTGTTTCTGCTAGATACCCATTTCGAATCCCTTTCCATTCCCAATCCCTAAATCGCAGATTGGAATGTTCAATCTCCCAATTTCCCCTTCACTTCAACCTTTCCAGAATCACCTTATATTCTGCTTCTGAGGGATTAATTCATCGAATTTGTGCACGACCTGATATTGATGATTTCTACTGGGAGAAAGTTCCAACGCCTATTCTTGATACGGTTGAAAGCCCTCTTTGCTTGAAGAACTTATCTCTGAGGGAGTTGAAACAACTCGCTGCTGAAATCCGTTTAGATTTGTCTTCTATTATGTCAGGTACACCAATCTCACTAAATCCAAGTATGGCTGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTCGGTGATCAAACATACGCTCATAAGATACTTACAGGAAGGAGATCACTCATGAAGACAATCAGACAAAAGAACGGCCTTTCTGGTTTTACTTCTCGATTTGAGAGTGAATATGACGCATTTGGTGCAGGTCATGGATGCAACAGCATATCTGCTGGACTTGGAATGGCAGTTGCACGGGATATTAAAGGGAGACGAGAACGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGTCTGGTCAGGTGTATGAAGCAATGAGCAATGCAGGATATTTGGACTCAAACATGGTGGTAATTTTGAATGATAGCCGCCACTCTTTACTCCCAAAAATTGAGGAGGGACAGAAAACCTCTGTCAATGCCCTATCTAGTACCCTTAGCAGGCTCCAATCCAGTAAATCTTTCCGGCGGTTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATAGGCATGGGCATGCATGAATTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGGCCACCAGGTTCTACTCTATTTGAAGAGCTTGGGTTGTATTACATAGGTCCAGTGGATGGACACAATATTGAAGATCTAATAAGTGTTCTTCAAGAAGTAGCTTCTCTGGATTCGATGGGTCCTGTCTTGGTTCATGTGATAACTGATGAAAATCAGGTTGATGAACAGAATAAAATAAGTTATATAACAGACAAGCAGATGGAAGAATCTTTTAGTTCTGATTTGTTAGGCAATGCTGGTCGGCCTCAAACATATGGTGATTACTTTGTGGAGACCTTGGTTGCCGAAGCTGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGATTCACAACGGAGCCATCACTTGAACTGTTTCGGGAAAAATTTCCAGATAGGATTTTTAATGTGGGAATTGCTGAGCAACACGCAGTGACGTTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCTTTTCTACAGAGAGCCTATGACCAGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTGGGTTCTGATGGTCCCCTCCAGTGTGGAGCATTTGACATAACGTTCATGTCATGCCTACCAAACATGATTGTCATGGCACCATCTGATGAGGTTGAACTTGTGCACATGGTGGCTACTGCTGCTCGTATCAATGACCGTCCAGTTTGCTTTCGGTATCCTAGGGGTGCCTTGGTTGGGGAAGATCACACTATACATGATGGAATCCCGATTGAGATTGGAAAGGGAAGAATTCTTGTTGAAGGTAAAGATGTTGCCTTACTGGGATATGGATCAATGGTTCAGAACTGTCTAAAGGCCCGTTCACTTCTTGCAAAACTTGGAGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGATATCAAGCTTCTAAGGCAGCTTTGTAAACATCATTCTTTTCTAATTACTGTCGAGGAAGGATCTATTGGAGGGTTTGGTTCCCATGTTGCTCAATTTATTGCTCTTGATGGACTTCTCGACGGAAGAATTAAGTGGCGACCAATTGTCTTACCAGACAGTTATATTGAACATGCATCACCAAATCAACAGCTTGACCAAGCAGGGTTGACCGGACATCACATTGCTGCAGCAACATTGAGTTTGCTGGGCCGTACCCGTGAAGCTTTATCGTTTATGTGTTTGTGA 2136 0.4284 MGTVSARYPFRIPFHSQSLNRRLECSISQFPLHFNLSRITLYSASEGLIHRICARPDIDDFYWEKVPTPILDTVESPLCLKNLSLRELKQLAAEIRLDLSSIMSGTPISLNPSMAVVELTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTIRQKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMSGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGQKTSVNALSSTLSRLQSSKSFRRFREAAKGVTKRIGMGMHELAAKVDEYARGMMGPPGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLDSMGPVLVHVITDENQVDEQNKISYITDKQMEESFSSDLLGNAGRPQTYGDYFVETLVAEAEKDKDIVVVHAGFTTEPSLELFREKFPDRIFNVGIAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELVHMVATAARINDRPVCFRYPRGALVGEDHTIHDGIPIEIGKGRILVEGKDVALLGYGSMVQNCLKARSLLAKLGVEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRIKWRPIVLPDSYIEHASPNQQLDQAGLTGHHIAAATLSLLGRTREALSFMCL* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0600 711 SMART Transket_pyr_3 390 555 IPR005475 -
Tpr7g0600 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 578 IPR029061 -
Tpr7g0600 711 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 71 355 IPR005477 GO:0008661|GO:0016114
Tpr7g0600 711 Pfam Transketolase, C-terminal domain 568 691 IPR033248 -
Tpr7g0600 711 Pfam Transketolase, pyrimidine binding domain 391 552 IPR005475 -
Tpr7g0600 711 Gene3D - 63 359 - -
Tpr7g0600 711 Gene3D - 390 561 - -
Tpr7g0600 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 710 IPR005477 GO:0008661|GO:0016114
Tpr7g0600 711 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 73 698 IPR005477 GO:0008661|GO:0016114
Tpr7g0600 711 CDD TPP_PYR_DXS_TK_like 394 549 - -
Tpr7g0600 711 SUPERFAMILY TK C-terminal domain-like 563 699 IPR009014 GO:0003824
Tpr7g0600 711 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 70 700 IPR005477 GO:0008661|GO:0016114
Tpr7g0600 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 1 710 - -
Tpr7g0600 711 Gene3D - 568 699 IPR009014 GO:0003824
Tpr7g0600 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 68 451 IPR029061 -
Tpr7g0600 711 CDD TPP_DXS 110 355 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0600 Tpr-Chr7 5173796 5181463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0600 428 650 Acyl Lipid Metabolism Gene Families AT1G55510 25.000 3.38e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0600 K01662 - gmx:100793268 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0600 7 5173796 5181463 Tpr7g0600 7 5173796 5181463 ECH