Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0497 ATGACTCGCGTCTATATTGGAAATCTTGATTCGCGAATTTCTGAAAGGGATCTTGAAGATGATTTTCATGTTTTTGGAGTTATACGAAGCGTTTGGGTTGCAAGGAGGCCACCTGGTTATGCTTTCATTGATTTTGATGACCGCAGAGATGCGCTCGATGCTATCCGTGAATTAGATGGTAAAAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAAAAGTGGGAGTGGAGGGGGAGGCAGAGGTGGTGGCGGTGGTGGTCGTGGTCGGTCTGGTGGGGGCGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCACGGGAGTGTCATTCTTCCCGTGGTGGTTCTGGAAGACGTCGGAGCCGTAGTCCGCCTCGATTGCGCAGGAGCCCAAGTTATGGGCGAAGGAGCTACAGTCCTCGTGAGCGGTCCCCTAGGCGGCGCAGCCCTTCTCCTCGTCGACGCAGTCCTTCACCACGTCGCCGCAGCTATAGCAGGTCACCACCTCCTTACCGTGCCCGTGAGGGGGTAACACAAGCTAACGGAAATGGGATAAGGGATGCACATCGGAGCAGAAGTTGA 594 0.5286 MTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNSKSGSGGGGRGGGGGGRGRSGGGGSDLKCYECGEPGHFARECHSSRGGSGRRRSRSPPRLRRSPSYGRRSYSPRERSPRRRSPSPRRRSPSPRRRSYSRSPPPYRAREGVTQANGNGIRDAHRSRS* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0497 197 SUPERFAMILY Retrovirus zinc finger-like domains 90 118 IPR036875 GO:0003676|GO:0008270
Tpr7g0497 197 SUPERFAMILY RNA-binding domain, RBD 2 96 IPR035979 GO:0003676
Tpr7g0497 197 SMART rrm1_1 3 69 IPR000504 GO:0003723
Tpr7g0497 197 Gene3D - 99 166 - -
Tpr7g0497 197 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Tpr7g0497 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Tpr7g0497 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Tpr7g0497 197 MobiDBLite consensus disorder prediction 66 197 - -
Tpr7g0497 197 MobiDBLite consensus disorder prediction 151 165 - -
Tpr7g0497 197 Pfam Zinc knuckle 99 113 IPR001878 GO:0003676|GO:0008270
Tpr7g0497 197 MobiDBLite consensus disorder prediction 104 119 - -
Tpr7g0497 197 Gene3D - 1 98 IPR012677 -
Tpr7g0497 197 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21 2 179 - -
Tpr7g0497 197 CDD RRM_SRSF3_like 3 71 - -
Tpr7g0497 197 ProSiteProfiles Zinc finger CCHC-type profile. 99 113 IPR001878 GO:0003676|GO:0008270
Tpr7g0497 197 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0497 Tpr-Chr7 4218651 4220858 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0497 K12896 - csin:114261802 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0497 7 4218651 4220858 Tpr7g0497 7 4218651 4220858 ECH