Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0477 ATGTCTACATCATATCTTCCTGCCACAACAGATTCGATTGCTCAAGCATTGGAGGCCAAAAACCCTTCTGATGCGATTTCCATTCTTTATCGCGTTCTTGATGATCCATCTTCTTCACCAGAAGCTCTGCGTATGAAAGAGCAAGCCATCACAAACCTTACTGAGCTTCTCAGGCAAGAGAACAGGGGAGAGGATCTGCGCAGCCTTCTCACTTCGTTGAGGCCCTTTTTCTCCTTGATTCCCAAGGCAAAAACTGCCAAGATTGTAAGGGGAATAATTGACTCGGTTGCTAAAATACCAGGGACATCTGATCTACAAATTTCACTCTGTAAAGAAATGGTGCAGTGGACTCGTGCTGAAAAGCGTACTTTTCTGAGGCAGCGAATTGAGGCAAGGCTTGCAGCACTTCTAATGGAAACTAAGGAGTATTCAGAAGCCTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGAGATTAGATGACAAGCTTCTTCTTGTAGACATCGACTTGCTGGAAAGCAAACTGCACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACAGCGGCAAGAACAGCTGCAAATGCTATTTACGTGCCTCCTGCTCAACAAGGTGCCATAGATCTACAGAGTGGAATCCTTCATGCTGAGGAGAAGGATTACAAAACTGCATACAGCTATTTCTTTGAAGCCTTTGAATCTTTCAATGCTCTTGAAGACCCCAAGGCTATTTTCAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTCAATCAAGCTGATGATGTTGGTGGAATTATTTCCTCTAAAGCGGGCTTGCAATATCTTGGACCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCCTATTCTAAGCGATCCTTGAAGTTATTTGAAACTGCTTTGCAGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCATCCTTGTATGATACCCTTCTGGAGCAGAATCTTTGTAGATTGATCGAGCCATTCTCAAGAGTTGAGATTGCACATATTGCTGAGCTTATTGAGCTTCCCATTGAGCACGTTGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTCATCATATTCGAAGATCCCAAGACTGATGCGATATATCCTGCAACTTTAGAGACGATTTCCAATGTTGGAAAAGTTGTCGACAGTCTTTATGTTAGGTCTGCCAAGATCATGGCATGA 1269 0.4389 MSTSYLPATTDSIAQALEAKNPSDAISILYRVLDDPSSSPEALRMKEQAITNLTELLRQENRGEDLRSLLTSLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRIEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAIFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAYSKRSLKLFETALQDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIEHVERKMSQMILDKKFAGTLDQGAGCLIIFEDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0477 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 3 422 - -
Tpr7g0477 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Tpr7g0477 422 Pfam PCI domain 285 386 IPR000717 -
Tpr7g0477 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Tpr7g0477 422 SMART PINT_4 320 403 IPR000717 -
Tpr7g0477 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-LIKE PROTEIN 3 422 - -
Tpr7g0477 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Tpr7g0477 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Tpr7g0477 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 129 IPR040773 -
Tpr7g0477 422 Gene3D - 46 421 - -
Tpr7g0477 422 SUPERFAMILY TPR-like 123 323 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0477 Tpr-Chr7 4061670 4064828 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0477 K03036 - gmx:100780845 739.184