Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0471 ATGGGAACGATTCTCATAAGACAACTCGAAAATCGTTACATCACCTCGTTGAAAAACTGCTTCAAAATAACAGAACTGAAGAAAATTCACGCTCACATAGTAAAGCTTTCACTCTCACAAAGCAACTTTCTAGTCACAAAAATGTTGAATTCATGCGACAACATGGCCAACGTTGGTTATGCTACCTTACTCTTCCAACAACTCCTTCACCCAAATATCTTCTCCTACAATGCCATCATCAGAACCTACACACACAATCGCCACTATTCCTTAGCAATCACTCGTTTCATTGAAATGCTAACACAATCAACAAAATCAGTTTTTCCAGACCAATTCACGTTCCAGTTTGTGATTAAATCTTGCGCGGGGATTCTTTGTCAGCGTCTTGGTATGCAGGTTCATGGGCTAGCTTTCAAATTTGGGACTGATTCGCATTATATAACGGAGAATGCATTGATTGGTATGTATATGAAATGTGGGGATTTGACGAATGCGTGTAAGGTGTTTGATGAAATGGGTTATAGAGATGTGGTTTCTTGGAATAGTTTGATATTTGGGTATGTGGAATTGGGGCAGATGAAGAGTGCAAGGAAATTGTTTGATGAAATGCCTGTTAGGACAATTGTGTCATGGACAACTATGATAACTGGGTATCGTAGAACAGAGTGCTATGCTGATGCATTGGATGTTTTTCGGGAGATGCAAATGGTGGGTATTGAACCTGATGAGATTAGTATTATAGCTGTTTTGCCAGCTTGTGCACAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCACAAGTATGCTGCGAAAAACAGGTTTTTGCAGAAGACTGGTATATGCAATGCATTGGTTGAAATGTATGCTAAGTGTGGTTGTATTGATGAAGCTCGGAGCTTGTTTGATCAGTTGGTTGAGAAGGATGTGATTTCTTGGAGTACCATGATTGGAGGGTTAGCTAATCATGGAAAAGGTTACGAGGCAATTCAACTTTTTGAAGAAATGCGGAAGACGAGGGTAGCTCCTAATGAGATAACCTTTCTTGATGTTTTGTTGGCTTGCTCTCATGCAGGCTTGTGGGATGAGGGGTTCAAATATTTTGATGTAATGCGGATGGATTATCATATAGAGCCACAAATTGAGCACTATGGTTGCCTCGTTGATCTACTTGGACGATCGGGTTGCCTTGATCAGGCTCTTGACACAATATTAAAAATGCCAATAAAGCCGGATTCAAGGATATGGAACTCTTTGTTAAGCTCTTGTAGGATTCATCGCAATCTTGAGATTGCTTTAATTGCAATGCAGCAGCTCATGGATCTGGATCCAGAGGAATTTGGGAACTATGTTTTGCTCGCGAACCTATATAAAGAACTTGGCAGGCTGGAAGATGTATCAAATATTAGAATATTCATAAGAAACAAGAGGATGAAGAAAACCCCGGGGAGTAGTTCGATTGAGGTTAACAATATGGTTCAAGAATTTGTATCAGCTGACGTCTCAAAGCCATTTTCACAAGAGGTCTTTCAGATCCTAGAAGGGCTGGCTTTACACCAAACTAGAACCGATGACTTAATGTAA 1581 0.4035 MGTILIRQLENRYITSLKNCFKITELKKIHAHIVKLSLSQSNFLVTKMLNSCDNMANVGYATLLFQQLLHPNIFSYNAIIRTYTHNRHYSLAITRFIEMLTQSTKSVFPDQFTFQFVIKSCAGILCQRLGMQVHGLAFKFGTDSHYITENALIGMYMKCGDLTNACKVFDEMGYRDVVSWNSLIFGYVELGQMKSARKLFDEMPVRTIVSWTTMITGYRRTECYADALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHKYAAKNRFLQKTGICNALVEMYAKCGCIDEARSLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMRKTRVAPNEITFLDVLLACSHAGLWDEGFKYFDVMRMDYHIEPQIEHYGCLVDLLGRSGCLDQALDTILKMPIKPDSRIWNSLLSSCRIHRNLEIALIAMQQLMDLDPEEFGNYVLLANLYKELGRLEDVSNIRIFIRNKRMKKTPGSSSIEVNNMVQEFVSADVSKPFSQEVFQILEGLALHQTRTDDLM* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0471 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Tpr7g0471 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 206 IPR002885 -
Tpr7g0471 526 Pfam PPR repeat family 207 254 IPR002885 -
Tpr7g0471 526 Pfam PPR repeat family 71 122 IPR002885 -
Tpr7g0471 526 Pfam PPR repeat family 307 347 IPR002885 -
Tpr7g0471 526 SUPERFAMILY TPR-like 156 464 IPR011990 GO:0005515
Tpr7g0471 526 Pfam PPR repeat 350 372 IPR002885 -
Tpr7g0471 526 Pfam PPR repeat 150 173 IPR002885 -
Tpr7g0471 526 Pfam PPR repeat 382 406 IPR002885 -
Tpr7g0471 526 Pfam PPR repeat 178 204 IPR002885 -
Tpr7g0471 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Tpr7g0471 526 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Tpr7g0471 526 TIGRFAM PPR: pentatricopeptide repeat domain 178 204 IPR002885 -
Tpr7g0471 526 TIGRFAM PPR: pentatricopeptide repeat domain 280 309 IPR002885 -
Tpr7g0471 526 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Tpr7g0471 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Tpr7g0471 526 Gene3D Tetratricopeptide repeat domain 138 269 IPR011990 GO:0005515
Tpr7g0471 526 Gene3D Tetratricopeptide repeat domain 14 128 IPR011990 GO:0005515
Tpr7g0471 526 PANTHER OS05G0439300 PROTEIN 6 523 - -
Tpr7g0471 526 Gene3D Tetratricopeptide repeat domain 282 501 IPR011990 GO:0005515
Tpr7g0471 526 Pfam E motif 425 487 IPR046848 -
Tpr7g0471 526 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0471 Tpr-Chr7 4025977 4029857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0471 48 515 Glycoside Hydrolase AT3G49170 30.704 7.23e-81 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0471 - - cam:101511241 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0471 7 4025977 4029857 Tpr7g0471 7 4025977 4029857 ECH