Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0424 ATGCATGTCATTGCAATGGATTTCTATGGCAACAAAACCCTCCTAACCTTAATGGACAAAGAAAAAACAGAACCGCAAGAATCCCCCAACATTCACCTTCGTGTACAAATCCAAACTCACAAAGAAACAAATGAACAAGAACATGTTCAATTTAGTCCACCAAGACATTCTACTAATTTTCCACAATCACCATGGACACTTTCCCATCTTCCATCTCCTTCCCCTTCATTGCTCTACCATTGTATTGCCTCCCTCCACCGTCATGAAGGAAACATCTATTCCATTGCAGTTTCCAAAGGTTTCATCTTTACTGGATCCAACAGTAGTCGAATTCGTGTTTGGAAGCAACCAGATTGCATGGACAAAGGCTACCTCAAATCAAGCTCCGGTGGTGTTCGCGCCATTTTAGCTTGTAACAATATGGTTTTCTCCACACACAAAGATCACAAAATTAGAATTTGGAACTTCACTGTTTCAGAAAACTTCAAATCCAAGAAAGTAGCTACACTTCCTAGAAGAACAAAAAACTCCATTCTAAACTTCAACAGAACCAAAAACAACAATCACAAACATAAAGAAACCGTTTCTTGCATGGCTTATTACCATTCAGAAGGACTATTATATACTGGCTCTCATGATAGAACAGTCAAAGCTTGGAGAATCTCTGATAGAAAATGTGTTGACTCATTTCGAGCACATGAAGATCATGTAAATTCAATCTTAGTAAACCAAGATGATGGTTGTGTTTTCACATGTTCTTCTGATGGATCAGTGAAAATATGGAGAAGGGTATACACAGAAAACTCACATACATTAACAATGACATTAAAGTTTCAACCTTCACCTGTTAATGCACTTGCACTAAGTTCATCATTCAACCATTGTTTCCTCTATTCAGGAACTTCAGATGGAATGATAAATTTCTGGGAGAAGGAAAGGTTGTGTTATAGATTCAACCATGGAGGATTTTTGCAGGGTCATCGTTTCGCGGTACTTTGTGTCGAAACGGTAGGGAACATGATATTTAGTGGATCAGAAGATACAACAATAAGAGTATGGAGAAGAGAGGAAGAAAGTTGTTATCATGAATGTTTGATGGTTTTGGATGGACATAGAGGACCTGTTAGATGTTTGGCTGCTTGTCTTGAGATGGAGAAAGTTGTTGTAGGGTTTTTGGTTTATAGTGCTAGTTTGGATCAAACATTTAAGGTTTGGAGAATTAAGGTTTTTTCTGATGATGAAAATGTGTGTTTGGATGTTGTTGGTGATAATAATAATAAGTGTGGAGGGAAAGTTAAGATTAGGGAGTATGATATGAGTCCTGTTTTGTCTCCTTCTTGGGTAGAGAAGAAACTTCAGGGTATTGGTGGGAATGTGAGTTTGGTATGTAATACAATGATCTCATCCTTAATGTTACTACCATCTGCTACAACATTTAGAAGACCTTGTTGTAGTTGTAGCATCACTCCATCATCATCTCCATCTTCATCTTCTCGAAGAATTGCTCTCTTTCATCTTCTCACTACTGGTGCTATTGCTTTACCACAACAATCCCAATTATTTGGTGCAAAAGGATCACAATTCTTCAGAATACCAGAAGCTAATGCTGCTGAAAACTTGTTTGATTGGGTCCAAAATGATAACAGAAGATTTCTACATGTTGTTTACAGTGTTGGAGATTTGGACAAGACTATCAAGTTCTACACTGAATGCCTTGGCATGAAGCTGTTGAGAAAACGCGATATACCAGAAGATAAATATTCAAATGCATTTCTTGGATATGGGCCTGAAGATTCCTACTTTACAGTTGAACTCACTTATAATTATGGAGTGGATAACTATAACATTGGAACTGGTTTTGGTCATTTTGGTATTGTAGCCGAAGATGTTGCAAAGACGGTAGATATTGTAAAAGCAAAAGGGGGAAAGGTTACCAGGGAACCCGGTCTTGTCAAAGGTGGCTCTGTAGTAACTGCTTCCGTTGAAGATCCTAGTGGTTATAGGTTTGAGCTTTTGGAGAGAAAACTCACGCGCGAACCCTTGTCCCAAGTGATGCTTCAAGTAGGTGATCTTGATCGTGTCGTAGACTTCTATCAGAAAGCTGCAGGCATGAAACTTCTCCGTAAGATAGACAACCCTGAGGAAAAGTACACAGTAGCCGTGTTGGGTTATGGTCATGGTCCTGTTCTAGAACTTACATATAACTATGGCGTCACTAATTACGATAAAGGAAATGGTTATGCACAGATTGCAATAGGCACAAATGATGTCTATAAGACTGCAGAAGCAATCAAATTAAGTGGAGGGAAGATTATCCGTGAACCTGGACCCTTACCGGGTATCAACACCAAGATCGTTGTTTGTTTGGACCCCGATGGTTGGAAATTGGTATTTGTTGATAATGTTGATTTTCTGAAGGAATTAGAGTGA 2430 0.3877 MHVIAMDFYGNKTLLTLMDKEKTEPQESPNIHLRVQIQTHKETNEQEHVQFSPPRHSTNFPQSPWTLSHLPSPSPSLLYHCIASLHRHEGNIYSIAVSKGFIFTGSNSSRIRVWKQPDCMDKGYLKSSSGGVRAILACNNMVFSTHKDHKIRIWNFTVSENFKSKKVATLPRRTKNSILNFNRTKNNNHKHKETVSCMAYYHSEGLLYTGSHDRTVKAWRISDRKCVDSFRAHEDHVNSILVNQDDGCVFTCSSDGSVKIWRRVYTENSHTLTMTLKFQPSPVNALALSSSFNHCFLYSGTSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCVETVGNMIFSGSEDTTIRVWRREEESCYHECLMVLDGHRGPVRCLAACLEMEKVVVGFLVYSASLDQTFKVWRIKVFSDDENVCLDVVGDNNNKCGGKVKIREYDMSPVLSPSWVEKKLQGIGGNVSLVCNTMISSLMLLPSATTFRRPCCSCSITPSSSPSSSSRRIALFHLLTTGAIALPQQSQLFGAKGSQFFRIPEANAAENLFDWVQNDNRRFLHVVYSVGDLDKTIKFYTECLGMKLLRKRDIPEDKYSNAFLGYGPEDSYFTVELTYNYGVDNYNIGTGFGHFGIVAEDVAKTVDIVKAKGGKVTREPGLVKGGSVVTASVEDPSGYRFELLERKLTREPLSQVMLQVGDLDRVVDFYQKAAGMKLLRKIDNPEEKYTVAVLGYGHGPVLELTYNYGVTNYDKGNGYAQIAIGTNDVYKTAEAIKLSGGKIIREPGPLPGINTKIVVCLDPDGWKLVFVDNVDFLKELE* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0424 809 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 551 671 IPR004360 -
Tpr7g0424 809 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 682 797 IPR004360 -
Tpr7g0424 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 85 115 IPR001680 GO:0005515
Tpr7g0424 809 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 452 IPR045182 -
Tpr7g0424 809 CDD WD40 81 406 - -
Tpr7g0424 809 TIGRFAM glyox_I: lactoylglutathione lyase 539 682 IPR004361 GO:0004462|GO:0046872
Tpr7g0424 809 TIGRFAM glyox_I: lactoylglutathione lyase 681 802 IPR004361 GO:0004462|GO:0046872
Tpr7g0424 809 Gene3D - 182 320 IPR015943 GO:0005515
Tpr7g0424 809 Gene3D - 321 428 IPR015943 GO:0005515
Tpr7g0424 809 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 550 674 IPR037523 -
Tpr7g0424 809 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 680 801 IPR037523 -
Tpr7g0424 809 Pfam WD domain, G-beta repeat 191 219 IPR001680 GO:0005515
Tpr7g0424 809 Pfam WD domain, G-beta repeat 323 353 IPR001680 GO:0005515
Tpr7g0424 809 Pfam WD domain, G-beta repeat 363 405 IPR001680 GO:0005515
Tpr7g0424 809 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Tpr7g0424 809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 261 - -
Tpr7g0424 809 ProSitePatterns Glyoxalase I signature 1. 553 574 IPR018146 GO:0004462|GO:0046872
Tpr7g0424 809 CDD GlxI_Ni 552 672 - -
Tpr7g0424 809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 222 - -
Tpr7g0424 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 363 IPR001680 GO:0005515
Tpr7g0424 809 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 549 675 IPR029068 -
Tpr7g0424 809 SUPERFAMILY WD40 repeat-like 80 408 IPR036322 GO:0005515
Tpr7g0424 809 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 681 802 IPR029068 -
Tpr7g0424 809 Gene3D - 530 676 IPR029068 -
Tpr7g0424 809 SMART WD40_4 78 115 IPR001680 GO:0005515
Tpr7g0424 809 SMART WD40_4 182 220 IPR001680 GO:0005515
Tpr7g0424 809 SMART WD40_4 223 262 IPR001680 GO:0005515
Tpr7g0424 809 SMART WD40_4 361 406 IPR001680 GO:0005515
Tpr7g0424 809 SMART WD40_4 269 310 IPR001680 GO:0005515
Tpr7g0424 809 SMART WD40_4 317 354 IPR001680 GO:0005515
Tpr7g0424 809 SMART WD40_4 118 155 IPR001680 GO:0005515
Tpr7g0424 809 PANTHER OS01G0232200 PROTEIN 6 452 - -
Tpr7g0424 809 Coils Coil 808 809 - -
Tpr7g0424 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 261 IPR001680 GO:0005515
Tpr7g0424 809 Gene3D - 25 181 IPR015943 GO:0005515
Tpr7g0424 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 229 IPR001680 GO:0005515
Tpr7g0424 809 Gene3D - 677 809 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0424 Tpr-Chr7 3516128 3521414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0424 191 410 Miscellaneous Gene Families AT5G08390 24.229 4.29e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0424 - - mtr:MTR_3g110185 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0424 7 3516128 3521414 Tpr7g0424 7 3516128 3521414 ECH