Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0380 ATGGTGGTTTCCGTAAGTCCTAACGGTGGTTCTACACCGCCACCGCCGCCGCAACAAGAACAAGCTAACAAGGATAGATTTACAAAACCTATCTCCCTTGCTGGTCCTACCGACTCTGATCGCCATCGTAACACCGAATTAGAGAAGTTTTTGGTTGATTCCGGGCTTTATGAGAGCAACGAAGAAGCTGCAAGTAGACAAGAGGTTCTTTGCCGCCTCGATCAGATCGTGAAAAGCTGGGTGAAGCAGTTGACACGCCAACGAGGCTACACAGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTCACTTTTGGCTCTTACCGACTAGGGGTTCACGGACCTGGAGCGGACATAGACACTTTGTGCATTGGTCCTTCCTATGTAAATCGAGAGCAAGACTTCTTCATCATTTTGCATAACATCCTGGCTGAAATGGAAGAAGTTACCGAACTTCACCCAGTTCCTGATGCACATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCTATTTTGGTTGTGCCAGAAGATCTTGATATCTCAGATGGTTCCATTCTGTATGATGTTGATGAGCAAACTGTTCGAAGTCTAAATGGCTGCCGAGTGGCAGATCAGATTCTTAAACTGGTTCCAAATGTTGAGCACTTCCGAACTACGCTGAGATGTTTGAAGTTTTGGGCCAAAAGACGCGGTGTTTATTCAAATGTTACGGGATTCCTTGGAGGTGTAAACTGGGCTATTTTAGTTGCTCGAATTTGCCAGCTTTACCCTAATGCAATCCCCAGTATGTTGGTTTCTAGATTCTTCAGGGTCTATTCACAATGGCGGTGGCCAAACCCTGTAATGCTATGCCCTATAGAAGAGAATGAACTGCAATTACCTATATGGGATCCTCGCAGAAACCATAGGGACAGGTATCATATTATGCCAATAATTACTCCGGCATACCCTTGCATGAATTCCAGCTACAATGTCTCAACAAGCACTCTTCGTGTTATGATGGAACAGTTCTGCTGTGGCAACAAGATTTGTGACGAAATTGAGCTTAACAAATCACAGTGGAGTGCACTTTTTCAGCCTTATGTCTTTTTTGAGGCATATAAAAACTATTTGCAAGTTGACATAGTTGCATTAGATGCTGATGATTTACTTTTGTGGAGAGGTTGGGTAGAATCCCGTCTGAGACAGCTAACCTTGAAGATAGAGCGAGATACCCATGGGATGCTGCAGTGTCATCCTTATCCACATGAGTATGCAGACACGTCCAAGCCCTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAAGGACAGCAATTTGATATACGTGAAACGGTTGATGAGTTCAGACAAGAAATTATTTCGTATGGTTATTGGAAGCCGGGGATGGAAATTTATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAAACGCACTCGAATGCCGAGGCATATAAACCATGCAACTGAGAAAATGGGTGATGATACCAGAAAGTGCTACTCTGGATCTAGCTCTTCTGAAAGGTGCGTCAAGAGGAAGAATAACTCTGAAATGGTGGATGTGAAGCCAGATAAACCAGAGAAGCGGACATCTGTTAGCCCACAGAGACTAGAGTGTGTTTCACCTGAAAGTTGTACTAGTAAATCGGGTGGTACACCTCAAATGAGTATTGAGTGTATTGAAGGGGTTAGGCAAGATGGATCAACAACGGAAGATGTCGATAGCAATTGTAAAATCAAGTCATCCGATGGACTCTTAGGAAGTGGTGCAATTACTGAAGTAGGTGACATGCAGATAAATGGAACAAGTTTTGTTGGCTCCACACATGATAAGCTCAAATCAAAGGCTTTAGAAGTTCTGAATGAGAATGGAGTCAATGGGGATAAAGCTCGGGACCTGGCTTTTGTTTGCTTGGAAAGGGCAGAAACTACATCTACAAAAAGCTTGGCAAATTGGGAAGAGGGTGCTGTTGGAATGGATCAACAACTGGACAAAGCTTGTAATTTCACCAGGGCTGAATGTTCGGATTATGCACCAAGTGCCAGCACCCAGAACCTCAATTGTGAGATGTCAGACTCAGGAGTGTATAAATTGAAGATGGGACTAGGAGGATGA 2193 0.4359 MVVSVSPNGGSTPPPPPQQEQANKDRFTKPISLAGPTDSDRHRNTELEKFLVDSGLYESNEEAASRQEVLCRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYVNREQDFFIILHNILAEMEEVTELHPVPDAHVPVMKFKFQGISIDLLYASISILVVPEDLDISDGSILYDVDEQTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYSQWRWPNPVMLCPIEENELQLPIWDPRRNHRDRYHIMPIITPAYPCMNSSYNVSTSTLRVMMEQFCCGNKICDEIELNKSQWSALFQPYVFFEAYKNYLQVDIVALDADDLLLWRGWVESRLRQLTLKIERDTHGMLQCHPYPHEYADTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRETVDEFRQEIISYGYWKPGMEIYVSHVRRKQLPAFVFPDGYKRTRMPRHINHATEKMGDDTRKCYSGSSSSERCVKRKNNSEMVDVKPDKPEKRTSVSPQRLECVSPESCTSKSGGTPQMSIECIEGVRQDGSTTEDVDSNCKIKSSDGLLGSGAITEVGDMQINGTSFVGSTHDKLKSKALEVLNENGVNGDKARDLAFVCLERAETTSTKSLANWEEGAVGMDQQLDKACNFTRAECSDYAPSASTQNLNCEMSDSGVYKLKMGLGG* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0380 730 MobiDBLite consensus disorder prediction 536 558 - -
Tpr7g0380 730 Pfam Poly(A) polymerase predicted RNA binding domain 373 432 IPR007010 GO:0003723|GO:0043631
Tpr7g0380 730 Pfam Poly(A) polymerase predicted RNA binding domain 435 505 IPR007010 GO:0003723|GO:0043631
Tpr7g0380 730 PANTHER POLY A POLYMERASE 18 572 - -
Tpr7g0380 730 SUPERFAMILY Nucleotidyltransferase 26 219 IPR043519 -
Tpr7g0380 730 Gene3D - 28 368 - -
Tpr7g0380 730 Pfam Nucleotidyltransferase domain 99 175 IPR002934 GO:0016779
Tpr7g0380 730 Pfam Poly(A) polymerase central domain 28 369 IPR007012 GO:0004652|GO:0043631
Tpr7g0380 730 SUPERFAMILY PAP/OAS1 substrate-binding domain 221 370 - -
Tpr7g0380 730 Gene3D Poly(A) polymerase predicted RNA binding domain 372 488 - -
Tpr7g0380 730 PANTHER NUCLEAR POLY(A) POLYMERASE 4 18 572 - -
Tpr7g0380 730 Gene3D Beta Polymerase, domain 2 58 214 IPR043519 -
Tpr7g0380 730 CDD NT_PAP_TUTase 66 220 - -
Tpr7g0380 730 MobiDBLite consensus disorder prediction 529 561 - -
Tpr7g0380 730 MobiDBLite consensus disorder prediction 1 44 - -
Tpr7g0380 730 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 373 498 IPR011068 GO:0003723|GO:0016779|GO:0031123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0380 Tpr-Chr7 3158129 3164942 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0380 K14376 - gmx:100802620 1224.54