LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g0292	ATGGATTCTGCAATAGCTTCAACTTATGCATCATCCCTCACTACAAATCTAACCAAAATTAGCACTGAACGAGTCACAAGAATCAGAAAAACTGTGTTCTTGGGTGAAACTACTAAGGGAAGTTTAAGCTCAAAATTTCTCACCATTCAATCTCCCAAAACTCACATCAATCTTACAAAAAATGGAGTTGCACGTGCTGTTCTTACACCAGAGATCAACGATTATGAAAAGTCCAAGACTTTTCAAGATGGACCCTATTTTGAGACTCCCAAAGCAGACCCAAAAAGTGTTGCTTCAATCATTTTGGGTGGTGGTGCTGGAACTCGCCTTTTTCCTCTTACTAGCAAAAGAGCCAAACCTGCGGTTCCAATTGGAGGGTGTTACAGACTCATTGATGTCCCTATGAGCAATTGCATCAACAGTGGTATTAGAAAAATATTCATCTTAACACAGTATAATTCTTTCTCTCTTAACCGACACTTGTCTCGCGCCTACAATTTTGGAAATGTTTCCACTTTTGGGGAGGGTTTTGTGGAGGTATTGGCTGCAACTCAAACATCTGGAGAAGCCGGGAAGAAATGGTTCCAAGGGACAGCTGATGCTGTGAGGCAATTTATATGGGTTTTCGAGGATGCTAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGTGATCATCTTTACCGAATGAACTATATGGATTTTGTACAGAAACATATCGACACAAATGCTGATATCACAGTTTCGTGTCTTCCCATGGACGACAGCCGAGCATCAGATTATGGGTTGATGAAAATTGACGGAACGGGACGGATTATACAGTTTGCCGAAAAGCCCAAGGGATCAGATTTAAAAGCAATGCGTGTTGATACCACGGTTCTTGGGTTATCTCCACAAGAAGCAAAGGAACATCCTTATATTGCGTCCATGGGTGTCTACGTGTTTAGAACTGAGACCTTACTGGAACTGCTAAGATTGAACGGTTCTACATGCAACGACTTTGGATCTGAAATTATCCCATCTGCTGTGAGCGGGCACAATGTCCAGGCATTTTTGTTCAATGACTACTGGGAGGATATTGGAACCATAAAGTCCTTCTTTGATGCAAATTTGGCCCTAACAGATAATCCTCCAAAATTTCAATTTTATGATCCAAAGACACCTTTCTTCACTTCCCCGAGATTCTTACCACCCACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCACGGTTGCTTCTTGAGGGAGTGTAGTGTTCAACATTCTATTGTTGGAATACGATCACGTTTAGAGTCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGATTACTATCAAACTGAGACTGAAATTGCATCGCTGCTAGCAGAAGGAAATGTCCCAGTTGGTGTTGGAGAAAATACCAAAATAAGGAATTGTATAATCGACAAGAATGCAAAAATTGGAAGAAATGTGATCATTACAAATGCTGATGGTGTTGATGAAGCAGACAAAACTAAGGAAGGATTTTACATTAGGTCGGGCATAACCGTTATACTGAAGAATGCAACAATTAAAGATGGAACAGTTATATGA	1593	0.4043	MDSAIASTYASSLTTNLTKISTERVTRIRKTVFLGETTKGSLSSKFLTIQSPKTHINLTKNGVARAVLTPEINDYEKSKTFQDGPYFETPKADPKSVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQYNSFSLNRHLSRAYNFGNVSTFGEGFVEVLAATQTSGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMNYMDFVQKHIDTNADITVSCLPMDDSRASDYGLMKIDGTGRIIQFAEKPKGSDLKAMRVDTTVLGLSPQEAKEHPYIASMGVYVFRTETLLELLRLNGSTCNDFGSEIIPSAVSGHNVQAFLFNDYWEDIGTIKSFFDANLALTDNPPKFQFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADYYQTETEIASLLAEGNVPVGVGENTKIRNCIIDKNAKIGRNVIITNADGVDEADKTKEGFYIRSGITVILKNATIKDGTVI*	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g0292	530	Pfam	Nucleotidyl transferase	99	376	IPR005835	GO:0009058\|GO:0016779
	Tpr7g0292	530	CDD	LbH_G1P_AT_C	398	524	-	-
	Tpr7g0292	530	CDD	ADP_Glucose_PP	100	361	-	-
	Tpr7g0292	530	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	86	395	IPR029044	-
	Tpr7g0292	530	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	9	530	IPR011831	GO:0005978\|GO:0008878
	Tpr7g0292	530	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	309	319	IPR005836	GO:0005978\|GO:0008878
	Tpr7g0292	530	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	97	491	IPR029044	-
	Tpr7g0292	530	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	98	495	IPR011831	GO:0005978\|GO:0008878
	Tpr7g0292	530	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	194	202	IPR005836	GO:0005978\|GO:0008878
	Tpr7g0292	530	SUPERFAMILY	Trimeric LpxA-like enzymes	392	530	IPR011004	-
	Tpr7g0292	530	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC	9	530	-	-
	Tpr7g0292	530	Gene3D	Hexapeptide repeat proteins	396	530	-	-
	Tpr7g0292	530	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	103	122	IPR005836	GO:0005978\|GO:0008878

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g0292	Tpr-Chr7	2405410	2409560	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g0292	K00975		-	gmx:100793757	858.211

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr7g0292	7	2405410	2409560	Tpr7g0292	7	2405410	2409560	ECH