Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0275 ATGTTGCTTCGGCGATTGCCCTGGATGGCGGTTTCAGCTGCCAAACCACTTCCATTGCATTCATTCATCGGAATTTTCACTCCCATTCCAAACAAACTCACTTTCCCCCCTTTATCCTTCTGCAGCTCCACTTCCGAACTCAACAATCTCACTCACCATCCTCAGGAACACGAAACAGATAATCGTCGCCCGCAGCATCTGAAACCTGGTCTTTATCTCGTTGGAACACCAATTGGAAATCTTGAAGACATCACCTTCAGGGCTCTCCGTGTGTTGAACGCTGCAGATGTTATACTATCCGAAGACACGAGGCACTCTGGGAAATTGCTTCATCATTACAATATTAAAACACCTCTTATGAGTTATCACAAATTTAATGAATCACAAAGGGAACAACTTGTGCTCAGGAGGTTGAAACAAGGTGAAATTGTGGCACTTATAAGTGACGCTGGAACTCCGGGTATCAGTGATCCTGGCATGGAGTTGGCCAAATTATGTGTTAGTGAAAATGTTCCTGTCGTTCCAATCCCTGGGCCATGTGCTTTGGTATCTGCTCTTTCTGCCTCGGGTTTATCAACCGATGAATTTACATTTGTTGGTTTTCTTCCAAAACATTCGGGATCAAGAAAGAAAAGGCTCATGGCTTCGGCGGAGCAGACAGCAACACAAATATTTTATGTCCCCCCTCACAAGCTTTCTCAGTTTCTTGAAGAGGGTTCGTCAATTTTTGGTGATACAAGGAGATGCGTGATTGCTCGAGAAATGACCAAGTTTCACGAAGAGTTTTGGCGCGGTACTCTCGATGAAGCCACCAAAGTATTTTCTATTCGTCAGACAAAGGGAGAACTTACTATATTGATTGAAGGGCAAGCAAATTCTAAAGTTGAACCGCCGTCAGACATCGAGCTTGAGAATGAACTAAGAGAATTAATTGAAAACGGCGAGAGTCTTTCCACGTGGTGTCAAGGGAACTAG 975 0.4421 MLLRRLPWMAVSAAKPLPLHSFIGIFTPIPNKLTFPPLSFCSSTSELNNLTHHPQEHETDNRRPQHLKPGLYLVGTPIGNLEDITFRALRVLNAADVILSEDTRHSGKLLHHYNIKTPLMSYHKFNESQREQLVLRRLKQGEIVALISDAGTPGISDPGMELAKLCVSENVPVVPIPGPCALVSALSASGLSTDEFTFVGFLPKHSGSRKKRLMASAEQTATQIFYVPPHKLSQFLEEGSSIFGDTRRCVIAREMTKFHEEFWRGTLDEATKVFSIRQTKGELTILIEGQANSKVEPPSDIELENELRELIENGESLSTWCQGN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0275 324 CDD RsmI 72 288 IPR008189 GO:0008168
Tpr7g0275 324 Gene3D - 178 295 IPR014776 GO:0008168
Tpr7g0275 324 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 71 319 IPR008189 GO:0008168
Tpr7g0275 324 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 70 289 IPR008189 GO:0008168
Tpr7g0275 324 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 54 320 IPR008189 GO:0008168
Tpr7g0275 324 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 71 270 IPR000878 GO:0008168
Tpr7g0275 324 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 148 159 IPR018063 GO:0008168
Tpr7g0275 324 Gene3D - 55 177 IPR014777 GO:0008168
Tpr7g0275 324 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 54 320 - -
Tpr7g0275 324 SUPERFAMILY Tetrapyrrole methylase 69 287 IPR035996 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0275 K07056 - gmx:100819709 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0275 7 2239258 2247692 Tpr7g0275 7 2239258 2247692 ECH