Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0220 ATGCATCAAGGAGATTACACCTCCGCTCCATACTATCAATTCCCTCATATGCAGCAAAACCCCAACCCTACACCCCCTCCTCAATCCGATCCAATTCCGAACCACTACGCTTCTGCACCTCCTTTCACTCCCAATTATGATTATTCCAATTATTCTCCTTACCCTCCTCATAATCCCGAACCTCTTCCTTCTTCCAACCCTAATTTCAATCCTACCATTGAATCCAATCCTCCTTATCAACAACCACCGTCACAGCCATTTTATCCACCCTACGATCAACATCACACCGCTCCAAATTATGCACCTCCTAACCCTAACCCTAATCCCAATCCCATTCCCAATTCATCGTTGTATAATTCGGCACCGTATCCTCAAACCGCATCTTCCCTTCCTCCGATTTCGTCATACCAAAGCCAATACGAGAATCCGGTGAAATCTGATTACGGTGCCGGTGCTGCTGGCGCTGGTGGTGGTTATTTTGATGACCGGTATGGAAGTTTTAATCGGAGAAGTTCTGATTTGGGATCCGAATTGTATGGTACGCGTCATGATGGTGGTTTGTCTAGGTATGAATCCGGTGGTGGTGCTGATGAAGGTTATGGAGATGGAGTTTATGCTTATCAAGGGGGAAAAGTTGAACCGTATGGTGCACGTGGTACGGCTCCTAAATCTTCAACTTGGAATTCAAATTCGTCAAATTCAACGCCTTCGTTTGATGATTTTGGGAGGCCGATTAGTTTTCCGAAAGAATCTTCTGTGCCAAGTAAGATTGTGAAAGCTGTGCCGAAGGTTGATACACAAGAAGATGCCAAAAGTGGAGTGCAAAAGTTTCGTGTCAAGCTGCTGGCAGAGAGTGGTGGTCAGAGTACAATGGATGTTCTCTGCCAGGTTGGTTTGGATGGACTTCGCATGCTAGATCCAAATACCAGTCGGACGTTGAGAATATATCCTCTTGAGAACATAACAAGATGTGATAGATTCGATTCATCTACCTTTGCATTTTGGTCGAAGAGCCCTGTAGACATTGAGCCAAGACGAATTAGATTGCAATCTAATAGTTACACTACCAACACACTTTTGGATACAGTGACTGCTGCGACCATACAGTTCAAGGAAATGGGTGGCAGTAGGAGGCCTGCTGAATCATTGAAAATAAATGAACAGACTGCCGAAAGAAAGAAAGGCCTCGGTGATTGGATGAATATCATCAAACCTGCCAATGAAGAGAAAGATCATTGGGTCCCAGATGAAGCAGTCTCAAAATGTACCGCTTGTGGCACTGATTTTGGGGCTTTTAACCGCAAGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACACATGGTAGAATTGCTCTAACTGCTGAAGAGAATGCTCAGCCAGTACGAGTTTGCGACCGATGCATGGCAGAAGTGACTCAGAGGCTGACTAGTGCTAAAGAGTCATCAAGTAAACCAATTCTGCAGAGTCATGAGGATCTTGCTCGGAAACTTCAGGAGGAGCTGGAGAGAAATCGGAAGTCATCAGGTTCCAAGTCTGATGGTTCTGGGAGACGGATGAAGGAGGTTGCATGTCCTATATGCACTGTCCATCTGCAGGTTCAGGTACCTAGCTCAGGTTCTGAGACCATTGAGTGTGGAGTTTGCCAGCATCCATTTCTTGTGAGTTCTTATTGA 1686 0.4526 MHQGDYTSAPYYQFPHMQQNPNPTPPPQSDPIPNHYASAPPFTPNYDYSNYSPYPPHNPEPLPSSNPNFNPTIESNPPYQQPPSQPFYPPYDQHHTAPNYAPPNPNPNPNPIPNSSLYNSAPYPQTASSLPPISSYQSQYENPVKSDYGAGAAGAGGGYFDDRYGSFNRRSSDLGSELYGTRHDGGLSRYESGGGADEGYGDGVYAYQGGKVEPYGARGTAPKSSTWNSNSSNSTPSFDDFGRPISFPKESSVPSKIVKAVPKVDTQEDAKSGVQKFRVKLLAESGGQSTMDVLCQVGLDGLRMLDPNTSRTLRIYPLENITRCDRFDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRPAESLKINEQTAERKKGLGDWMNIIKPANEEKDHWVPDEAVSKCTACGTDFGAFNRKHHCRNCGDIFCDKCTHGRIALTAEENAQPVRVCDRCMAEVTQRLTSAKESSSKPILQSHEDLARKLQEELERNRKSSGSKSDGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSSY* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0220 561 CDD PTB 258 334 - -
Tpr7g0220 561 MobiDBLite consensus disorder prediction 1 138 - -
Tpr7g0220 561 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 416 476 IPR017455 -
Tpr7g0220 561 MobiDBLite consensus disorder prediction 217 242 - -
Tpr7g0220 561 Pfam FYVE zinc finger 412 476 IPR000306 GO:0046872
Tpr7g0220 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 481 IPR013083 -
Tpr7g0220 561 MobiDBLite consensus disorder prediction 113 138 - -
Tpr7g0220 561 MobiDBLite consensus disorder prediction 19 38 - -
Tpr7g0220 561 SMART fyve_4 408 477 IPR000306 GO:0046872
Tpr7g0220 561 SUPERFAMILY PH domain-like 275 339 - -
Tpr7g0220 561 PANTHER PROTEIN FREE1 1 560 IPR045893 GO:0036258|GO:0043130
Tpr7g0220 561 MobiDBLite consensus disorder prediction 221 240 - -
Tpr7g0220 561 Coils Coil 491 511 - -
Tpr7g0220 561 PANTHER PROTEIN FREE1 1 560 - -
Tpr7g0220 561 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0220 Tpr-Chr7 1807876 1814038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0220 404 477 EF-hand Containing Proteins AT3G14270 37.500 7.65e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0220 - - gmx:100794840 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0220 7 1807876 1814038 Tpr7g0220 7 1807876 1814038 ECH