Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0200 ATGTTATCCTTTAATCCCTCATGTGGATGTTGTTGCGGTATTTCCACAGCAACAAAAGCATTCCAATTTCACTTCCGAACTTCACCGTTTTTCTTCACTCCCACTAACAACTATAATTTCCGTTATAGCATTACCAGAGCCACTTCTACTTTCTCCGATAAATCCAACTCCAATGAACAACCAAAATCAAATTACTCCGGCGTGCAGTTACAAGACACCGTCGACGGTGGAACCACCAAATCTGCAAAACTTAGACTCGACAGTTGGATCTCTTCTCGCATCAATGGTATCAGTAGAGCTCGCGTTCAATCTAGTATTAAAGCTGGACTCGTTCATGTCAATGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAGAGCTGGGGATGAGATCAAGTGCACAATTGCGGAGTTGCAGCAGTTGAGAGCTGTGCCGGAAAACATACCTTTGGATATAGTGTATGAAGATGACCACTTGCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGAAATACATCTGGGACACTTGTAAATGGAATTCTTCACCATTGCAACCTGCCTAATGTTGAATTTTCTAAAGAGGGAGCTCTTTCAGATACAGAAGATTCTGATGATGAACTTAGTGGCTTCTCATCCCAAGAAAGTTCTTGTGATGGTTTAGATTCTACATTTTCTATGGCATCAATTCGACCAGGGATTGTACACAGATTAGACAAAGGCACGAGTGGGTTACTAGTTGTTGCTAAGGATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTACGCACTATCAACAGGGTCTATGTTAGTCTCACTGCTGGGTTACCTACTCCAGTTGCTGGTCGTGTTGAGGTTCCAGTTGGTCGTGATCCTAATAACCGGCTTCGTATGACCTCTGTAGTTGGAGCAGTTAATTCTGTGAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATTCGTGCACATGCCAAGTATTTGGGTGTACCTCTGCTTGGTGACGAGGTATATGGAGGGACAAAAAGCATGGTCTTGTCACTGCTACGGCCACGAACAACTGCGAGTTTGCATAGCGAAATGTTTAAAGTAGTTTCTGAGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTGGGGTTTCAGCATCCTCATACAGGGGAGCAGGTGCACTTTTCATGCGAACCCCCTGTAGATTTTAATGAGATTTTGAGCCAGCTTCGTAGAATTGGAAGTGAAAAAATTTCTCACTCAAAAGTCAAATTATTAAAAGGGGTATTGTAA 1365 0.4315 MLSFNPSCGCCCGISTATKAFQFHFRTSPFFFTPTNNYNFRYSITRATSTFSDKSNSNEQPKSNYSGVQLQDTVDGGTTKSAKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEGALSDTEDSDDELSGFSSQESSCDGLDSTFSMASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTINRVYVSLTAGLPTPVAGRVEVPVGRDPNNRLRMTSVVGAVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTASLHSEMFKVVSELDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFNEILSQLRRIGSEKISHSKVKLLKGVL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0200 454 Gene3D - 78 140 IPR036986 GO:0003723
Tpr7g0200 454 SUPERFAMILY Pseudouridine synthase 144 435 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr7g0200 454 Gene3D Pseudouridine synthase 209 438 - -
Tpr7g0200 454 Gene3D Pseudouridine synthase 151 199 - -
Tpr7g0200 454 CDD PseudoU_synth_RluA_like 159 408 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr7g0200 454 CDD S4 85 163 - -
Tpr7g0200 454 ProSiteProfiles S4 RNA-binding domain profile. 84 157 - -
Tpr7g0200 454 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 80 436 - -
Tpr7g0200 454 Pfam S4 domain 85 131 IPR002942 GO:0003723
Tpr7g0200 454 MobiDBLite consensus disorder prediction 200 219 - -
Tpr7g0200 454 SMART s4_6 84 149 IPR002942 GO:0003723
Tpr7g0200 454 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 80 436 - -
Tpr7g0200 454 Pfam RNA pseudouridylate synthase 158 353 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr7g0200 454 ProSitePatterns Rlu family of pseudouridine synthase signature. 239 253 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Tpr7g0200 454 SUPERFAMILY Alpha-L RNA-binding motif 82 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0200 Tpr-Chr7 1677398 1682023 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0200 K06180 - gmx:100810383 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0200 7 1677398 1682023 Tpr7g0200 7 1677398 1682023 ECH