Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0196 ATGGCATTCATAAAATCAAGGGTACAAATTCACTTGCAAAACTCTCTTTTCCCTCTCTTACCACACTCTTTCAGACTATGTTCTTCTTCAACTCTTCTTTCACAACACGACACCGACAACGACAACGACACTCCTCGAAACAACACCAATCTATCCTCCGAAGACACTCAATTAGTCGACAAGTTTCACACCATAATCAAAGACCACTACCGCAAAAACCCTAACCCTAACCCTAATCCCATTTCACCCTCACACAATTTCTCCATACCCGATCTTTCCATCGAATTTTCCAAAATCTCCACCGTTCATTCAATTTCACCCTCCATCACACGCCGTGTGATTGAGAAATGCGGTGGTGTCCGCCACGGTATTCCATTTCTTCAATCCCTAGCTTTTTTCAATTGGGCCACGACGCTCGAAGGTTTTCCCTCATCCCCGGAGCCCTACAATGAAATGATTGATCTTGCCGGAAAGCTCAGACACTTCGAATTGGCGTGGAGTTTGATCGATTTGATGAAATCACGCGGAGTTGAAATAACTGTCAGCACATTTTCTATTCTTGTTCGGCGCTACATTAGGGCTGGATTGGCTGCGGAGGCAGTGCACGCTTTTAACCGAATGGAGGACTATGGTTGTATACCTGATAAGGTTTCATTTTCGATTGTTATTAGTAGTTTATGTAAGAAGAGAAGAGCGAGTGAAGCACAAGCGTTTTTCGATAGTCTTAAGCATAAGTTTGAACCGGATGTTATAGTTTATACTAGCTTAGTTCATGGTTGGTGTCGTGCTGGTGACATAGCGAAAGCTGAGGAGGTTTTCAGTGATATGAAGGTGGCTGGTGTTAAGCCTAATGTTTATACATATAGCATTGTGATTGATTCGTTATGTCGGTGTGGACAGATTACTCGTGCTCATGATGTTTTCTCTGAGATGATTGATGCTGGATGTGATCCTAATGCTGTTACTTTTAATAGTCTTATGAGGGTTCATGTGAAAGCTGGTAGGACTGAAAAGGTTTTGCAGGTTTATAATCAAATGAAGAGACTTGGCTGTGTTGCTGACACGATTAGTTATAATTTCTTAATTGAGAGTCATTGTAAGGATGAGAATCTCGATGAAGCTGTCAAGGTTCTTGATACAATGGTTAAGAAAGGGGTTGCTCCTAATGCATCTTCTTTCAATTCAATTTTCGGATGCATAGCTGAGTTGCATGATGTGAATGGCGCACATCGGATGTATGCTAAAATGAAAGATCTGAAGTGCAAGCCTAATACCTTGACTTTTAATATACTGATGAGAATGTTTGCTGACTCGAAATCTATTGATATGGTTCTGAAGTTGAAAAAGGAAATGGATGAGAGTGAAGTTGAACCTAATGTGAATACTTACCGAATTTTGATTTTGATGTTTTGTGAAAAGGGGCACTGGAATAATGCATACAAGTTAATGAAGGAGATGGTTGAAGAAAAAAGCCTAAAGCCAAATCTGTCGATTTATGAAACGGTTTTGGAGCTGCTGAGGAAGGCTGGACAGCTAAAAATGCATGAAGAACTGGTCGATAAGATGGTTGCCAGAGGATTTGTCTCTCCTCGCCCTTTGTAG 1602 0.4107 MAFIKSRVQIHLQNSLFPLLPHSFRLCSSSTLLSQHDTDNDNDTPRNNTNLSSEDTQLVDKFHTIIKDHYRKNPNPNPNPISPSHNFSIPDLSIEFSKISTVHSISPSITRRVIEKCGGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFELAWSLIDLMKSRGVEITVSTFSILVRRYIRAGLAAEAVHAFNRMEDYGCIPDKVSFSIVISSLCKKRRASEAQAFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKVAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCVADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASSFNSIFGCIAELHDVNGAHRMYAKMKDLKCKPNTLTFNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYKLMKEMVEEKSLKPNLSIYETVLELLRKAGQLKMHEELVDKMVARGFVSPRPL* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Tpr7g0196 533 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 13 529 - -
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 245 IPR002885 -
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Tpr7g0196 533 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 529 - -
Tpr7g0196 533 SUPERFAMILY TPR-like 221 488 IPR011990 GO:0005515
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Tpr7g0196 533 Pfam Pentacotripeptide-repeat region of PRORP 358 521 IPR033443 -
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Tpr7g0196 533 Pfam PPR repeat 211 241 IPR002885 -
Tpr7g0196 533 Gene3D Tetratricopeptide repeat domain 383 453 IPR011990 GO:0005515
Tpr7g0196 533 Gene3D Tetratricopeptide repeat domain 241 312 IPR011990 GO:0005515
Tpr7g0196 533 Gene3D Tetratricopeptide repeat domain 313 382 IPR011990 GO:0005515
Tpr7g0196 533 Gene3D Tetratricopeptide repeat domain 454 525 IPR011990 GO:0005515
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 462 495 IPR002885 -
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 183 215 IPR002885 -
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 356 390 IPR002885 -
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 251 285 IPR002885 -
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 286 320 IPR002885 -
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 321 355 IPR002885 -
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Tpr7g0196 533 TIGRFAM PPR: pentatricopeptide repeat domain 149 180 IPR002885 -
Tpr7g0196 533 Pfam PPR repeat family 248 297 IPR002885 -
Tpr7g0196 533 Pfam PPR repeat family 149 190 IPR002885 -
Tpr7g0196 533 Pfam PPR repeat family 318 354 IPR002885 -
Tpr7g0196 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 494 IPR002885 -
Tpr7g0196 533 Gene3D Tetratricopeptide repeat domain 112 235 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0196 Tpr-Chr7 1655841 1659472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0196 149 530 Glycosyltransferase AT1G05670 28.721 2.60e-53 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0196 - - gmx:100800850 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0196 7 1655841 1659472 Tpr7g0196 7 1655841 1659472 ECH