Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0190 ATGCCTACACAAGCAGCTGAAGAACCCCACGTTACCAACTTGAAGCCCATTTTTGGTGCTTCAGGAGTGAAAGGCAAGAAAGTGACAACATTGTCCTCACAAGTCACTATATCTGATTTCATTCAATCCATCATTAAAGATAGCCCAACTGAAATTGACTCACCATTTAGCGTCCTTGATTTAAGGGTCCTAATTGATCTCATGACCAAATGGACCACAAACCTTCCAACCGTTAAACCTTACTATGCAGTGAAATGCAACCCAAATATTTCAATTATAGGTGCTTTGGCTGCACTTGGCTCCAATTTCGACTGTGCTAGCCGCGCCGAAATTGAATCCGTTTTATCACTTGGTGTTTCACCTGACAGAATTATCTATGCCAACCCGTGTAAATCAGAATCACATATTAAATATGCTGCAAGTGTCGGTGTAAATGTAACAACTTTCGATTCCGTTGGAGAAGTTGAAAAGATCAGAAAATGGCACCCGAAATGTGAACTAATCCTCCGCATTAAGCCGGAGGAAGACAGCGGAGCTTGGTGCTGTTTGGGTCTCAAATATGGTGCACTTGTTGAGGAAGTTCCCGAGCTTCTCAGAGCTGCTGACATGGCGGGACTTAAAGTAACCGGCGTGTCATTTCACATAGGTAGCGGAGGAGCTGACTCACGAGCCTACCACGGCGCCATTTTATTGGCTAAAAATGTTTTTGAGATCGTTTCACAGCTTGGAATGCCAAAAATGAAAATTCTCGATATTGGTGGTGGATTCACTTCTGGGTCAAAATTTGACGAAGCATCGTTAAACATTAATGATGCAATTAATTCTTATTTCGAAAATGAAGATGATCTTGTTGTTATTGGTGAACCTGGTCGTTATTTTGCGGAAACAACATTCACCTTAGCAACAAAAGTTATTGGAAAACGTGTGAGAGGTGAATTAAGAGAGTATTGGATTGATGATGGGATTTATGGAACCCTCAATAACATTGTGTTTGATAATGCCATTGTCAAGTGCATGACACTTAGGTTTGGTTCAAAGCCTGAAAATATTACATGCAAAGATTCCAAAACTTACCCTTCAACGGTTTTTGGACCCACTTGTGATTCATTTGATACAGTACTTAAAGAGTATCCATTACCTGAACTTGAGATGGATGATTGGCTAGTGTTTCCTAATATGGGTGCTTATACAACTTCATCAGGAACCAATTTCAATGGGTTTAGTTCCTCAACTAAACATATTCATCTTGCATGTTCAAGTTCAAGTTCTGTCGCAAGAGAACAAACCATGTTTTGA 1296 0.4035 MPTQAAEEPHVTNLKPIFGASGVKGKKVTTLSSQVTISDFIQSIIKDSPTEIDSPFSVLDLRVLIDLMTKWTTNLPTVKPYYAVKCNPNISIIGALAALGSNFDCASRAEIESVLSLGVSPDRIIYANPCKSESHIKYAASVGVNVTTFDSVGEVEKIRKWHPKCELILRIKPEEDSGAWCCLGLKYGALVEEVPELLRAADMAGLKVTGVSFHIGSGGADSRAYHGAILLAKNVFEIVSQLGMPKMKILDIGGGFTSGSKFDEASLNINDAINSYFENEDDLVVIGEPGRYFAETTFTLATKVIGKRVRGELREYWIDDGIYGTLNNIVFDNAIVKCMTLRFGSKPENITCKDSKTYPSTVFGPTCDSFDTVLKEYPLPELEMDDWLVFPNMGAYTTSSGTNFNGFSSSTKHIHLACSSSSSVAREQTMF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0190 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 82 100 IPR000183 GO:0003824
Tpr7g0190 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 102 114 IPR000183 GO:0003824
Tpr7g0190 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 205 218 IPR000183 GO:0003824
Tpr7g0190 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 285 304 IPR000183 GO:0003824
Tpr7g0190 431 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 394 407 IPR000183 GO:0003824
Tpr7g0190 431 Gene3D Alanine racemase 64 293 IPR029066 -
Tpr7g0190 431 SUPERFAMILY PLP-binding barrel 60 294 IPR029066 -
Tpr7g0190 431 CDD PLPDE_III_ODC 53 414 - -
Tpr7g0190 431 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 66 294 IPR022644 GO:0003824
Tpr7g0190 431 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 53 413 IPR009006 GO:0003824
Tpr7g0190 431 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 82 100 IPR022653 -
Tpr7g0190 431 PANTHER ORNITHINE DECARBOXYLASE-LIKE 21 421 - -
Tpr7g0190 431 PRINTS Ornithine decarboxylase signature 54 78 IPR002433 GO:0006596
Tpr7g0190 431 PRINTS Ornithine decarboxylase signature 80 107 IPR002433 GO:0006596
Tpr7g0190 431 PRINTS Ornithine decarboxylase signature 124 148 IPR002433 GO:0006596
Tpr7g0190 431 PRINTS Ornithine decarboxylase signature 154 176 IPR002433 GO:0006596
Tpr7g0190 431 PRINTS Ornithine decarboxylase signature 320 333 IPR002433 GO:0006596
Tpr7g0190 431 PRINTS Ornithine decarboxylase signature 361 371 IPR002433 GO:0006596
Tpr7g0190 431 PRINTS Ornithine decarboxylase signature 381 394 IPR002433 GO:0006596
Tpr7g0190 431 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 295 394 IPR022643 GO:0003824
Tpr7g0190 431 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 240 257 IPR022657 -
Tpr7g0190 431 SUPERFAMILY Alanine racemase C-terminal domain-like 276 413 IPR009006 GO:0003824
Tpr7g0190 431 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 21 421 IPR002433 GO:0006596
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0190 Tpr-Chr7 1580065 1581659 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0190 K01581 - gmx:548088 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0190 7 1580065 1581659 Tpr7g0190 7 1580065 1581659 ECH