Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0016 ATGAGAAAGACGAAGAAGAGCAGCAGTACTACATCAGATTCAGAGTGTTGTAAACAAACAGACCAAACCCCTTCTGCTTCTGTTGATGCTCCTCCCAAGCTTGATGATGGCTTCTATGAAATTGAAACCATACGCCGTAAGAGGCTCCGCAAGGGTGAGGTCCAGTACCTGATTAAATGGCGCGGGTGGCCGGAGACTGCCAACACTTGGGAACCTCTTCATAATCTACAGTCTGTTCCAGATCTCATTCATGCTTTTGAAGAAAGCCTCAAATCAGGTGGTGGTGGTGTAGGAGTAGGAGTAGTAGGAGTTGGAGTAGGAGGAGCAAAACATCATCGCAAGCGCACCCGACGCACCACCACCCTTCCACCTCACTCTCAACCACCACAAACTGGAATATCCAATCTACTCAATACCTCACAACAACACATTGCTCAAACCAATCACCTAAATCATCATTCCAATGAACTCAAACCAACCCCAAATACTGGCCTCCATGCAGATAACCTCTCAATACATTTCCAACAAACTCTCATTTCAACACCCAATGATGCTCGCTCCAACGGGGATTCACTTCAAACTGACCGCTACACAGGAGCTAAAAGGAGAAAATCTAGCTCCGTTAAAAGGTTCAAGAAAGAGGATTCTGCATGTCAATCTGTTGACACAAAGAATGCAACTGACATATCTGTTGGTAAGCTTGAACCCGGTGGTTGGACACAAACTGCTGGCTATATGGGGAATAACAGTCATCAAAGCATTGCCAATGCTATTGTCAAGATTATAAAGCCAATAGGCTATTCAGCTTCTCTATCTTGCTACATGCAAGATGTATCAGTCACCTTTATGGCTTTGAGGTCCGATGGAACAGAAGTAATGGTGGATAACAAATATCTCAAGACAAACAATCCACTACTGCTGATCAATTTCTATGAGCAGCATCTCCGATACAATCCTACTTCTTAA 966 0.442 MRKTKKSSSTTSDSECCKQTDQTPSASVDAPPKLDDGFYEIETIRRKRLRKGEVQYLIKWRGWPETANTWEPLHNLQSVPDLIHAFEESLKSGGGGVGVGVVGVGVGGAKHHRKRTRRTTTLPPHSQPPQTGISNLLNTSQQHIAQTNHLNHHSNELKPTPNTGLHADNLSIHFQQTLISTPNDARSNGDSLQTDRYTGAKRRKSSSVKRFKKEDSACQSVDTKNATDISVGKLEPGGWTQTAGYMGNNSHQSIANAIVKIIKPIGYSASLSCYMQDVSVTFMALRSDGTEVMVDNKYLKTNNPLLLINFYEQHLRYNPTS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0016 321 Pfam Chromo (CHRromatin Organisation MOdifier) domain 39 88 IPR023780 -
Tpr7g0016 321 MobiDBLite consensus disorder prediction 107 130 - -
Tpr7g0016 321 ProSitePatterns Chromo domain signature. 56 76 IPR023779 -
Tpr7g0016 321 SMART ChS_2 247 320 IPR008251 GO:0005634
Tpr7g0016 321 MobiDBLite consensus disorder prediction 10 27 - -
Tpr7g0016 321 MobiDBLite consensus disorder prediction 180 219 - -
Tpr7g0016 321 SMART chromo_7 38 91 IPR000953 -
Tpr7g0016 321 ProSiteProfiles Chromo and chromo shadow domain profile. 39 88 IPR000953 -
Tpr7g0016 321 SUPERFAMILY Chromo domain-like 33 91 IPR016197 -
Tpr7g0016 321 MobiDBLite consensus disorder prediction 1 31 - -
Tpr7g0016 321 CDD CD_CSD 39 88 - -
Tpr7g0016 321 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 14 129 - -
Tpr7g0016 321 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 140 320 - -
Tpr7g0016 321 MobiDBLite consensus disorder prediction 180 195 - -
Tpr7g0016 321 Gene3D - 19 91 - -
Tpr7g0016 321 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 14 129 IPR044251 GO:0006325|GO:0031507
Tpr7g0016 321 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 140 320 IPR044251 GO:0006325|GO:0031507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0016 Tpr-Chr7 157475 161674 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0016 - - cam:101503633 370.933