Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0015 ATGTCCTGTTTATTGCCACACTTCAACTGTCACCCAGACACTTTCATTAGAACTACTCCTCCTATCATCCATACCCACCGTCATCATCATCATCATTTCATTCTTCAATCAGCAGCCAAAACAAGACACTTCCGCCCACAATGTATTTTGTCTCCTTCAACTTCATCAACGGCACTCCTTGATTTCGATAATAGTAATCATAAATTCGATGCTTGGCCCTATGTCGCCGCTCAGGCAACCTCCTCTGCAGAATTACTTCTTAATAGTGAAGAGGCCGTCGTAACTGCTGCTGCTTCTGAAGCCCTTGCTCTTGCTAAAGCAGCTGCCAAGCTTGCAAAGGATACAGCTTTATTAGTCAAAAACAAACCTCCACAACAACCGCAACTTCCTTCAACGTCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGCAGCAGAAGCTGCTGCTGCAGCAGCAGCAGGAGGAGGATCCACAGGCATTGGACCAGAAATAATCCAAGAGGTTGAAATTAGCCCCATCCAAGAAGAGGAGGAGGAGTTTGACGATGAGGAACCTACCAGTGAGGAGCTTGAAGATGCCCAGGAACAATTTTCCGATAGTATAGATGCAAGATCTGGGCGCCAAACAGAAAGAAAAGCCAGAAGAGTAAGAGCAGCTGGGAAGGCTGCCACAAATGTTGTGTCGTTTAAGTTTGGATCCACTGGCAGGAAAAAGCGTGTCCGTACACAAGAGGTTCATTATTCTGATCCACTGCGTTCCTTAAGATCAACAACTAGAGCTACAAGGCTTCTTACTGCATCAGAAGAAGTTAAGTTGTCTGAAGGAATACAGGACCTGATAAAGCTCGAAAAACTTCAAGAGGATCTTGCAGAAAAATTTGGTGGCCAGCCCACATTTGCCCAATGGGCTACAATGGCAGGGGTAGATCAGAAGACCCTAAGAAAACGTTTAAACTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTATCAGGGATCTGGGATGAGTCTGCAAGATCTAGTCCAGGAAGGATGCCGCGGCCTGGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTCTCTCTTCAGTCAAGAATTATTCGATTGCCGCTCTACATGGCGGGGGCAGCTTACAAAGTGAATGTGGCAAGAAAACAATTGTACATGGAAAATGGAAGACAGCCTAACGATGAAGAAGTTGCTGAAGCAACTGGGATGTCAATGAAGAGGCTTAATGCTGTACTTTTGACTCCAGAAACTCCCAAATCTCTAGAAACGAAAGTTGGGATCAACCTTAAACCTTCAGAAGTACTTGCTGATCCTGAAGCTGAAACAGCTGAGGAACAGCTCATTAAGCAGTTCATGAAAAAGGACCTGGAAAAGGTACTGGACAGTCTCAATCAAAGAGAGAAACAGGTGATTAGATGGAGATTTGGTATGGATGATGGCAGGATGAGGACCCTGCAAGAGATAGGGGAAATGATGAGTGTGAGTAGGGAGAGAGTTAGACAAATTGAGGCATGTGCTTTTAGGAAGCTTAAGAACAAGAAGAGAGCCAATCATTTGCAGCAGTACGTGGTTTCATAA 1686 0.4383 MSCLLPHFNCHPDTFIRTTPPIIHTHRHHHHHFILQSAAKTRHFRPQCILSPSTSSTALLDFDNSNHKFDAWPYVAAQATSSAELLLNSEEAVVTAAASEALALAKAAAKLAKDTALLVKNKPPQQPQLPSTSENLLLKWVQHMEAAEAAAAAAAGGGSTGIGPEIIQEVEISPIQEEEEEFDDEEPTSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSLQSRIIRLPLYMAGAAYKVNVARKQLYMENGRQPNDEEVAEATGMSMKRLNAVLLTPETPKSLETKVGINLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0015 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 397 448 IPR013324 -
Tpr7g0015 561 PRINTS Major sigma-70 factor signature 353 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 PRINTS Major sigma-70 factor signature 377 385 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 PRINTS Major sigma-70 factor signature 499 511 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 PRINTS Major sigma-70 factor signature 520 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 PRINTS Major sigma-70 factor signature 535 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 249 398 IPR013325 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 MobiDBLite consensus disorder prediction 175 198 - -
Tpr7g0015 561 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 327 549 IPR014284 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 Gene3D - 402 474 IPR036388 -
Tpr7g0015 561 Gene3D - 481 561 IPR036388 -
Tpr7g0015 561 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 35 560 - -
Tpr7g0015 561 CDD Sigma70_r4 489 547 - -
Tpr7g0015 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 466 558 IPR013324 -
Tpr7g0015 561 Gene3D RNA Polymerase Primary Sigma Factor 128 401 - -
Tpr7g0015 561 Pfam Sigma-70 region 3 411 482 IPR007624 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 35 560 - -
Tpr7g0015 561 MobiDBLite consensus disorder prediction 175 219 - -
Tpr7g0015 561 ProSitePatterns Sigma-70 factors family signature 2. 520 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 Pfam Sigma-70, region 4 495 547 IPR007630 GO:0003700|GO:0006352|GO:0006355
Tpr7g0015 561 PIRSF Sigma_factor_SigC 11 561 IPR016262 -
Tpr7g0015 561 Pfam Sigma-70 region 2 329 397 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0015 Tpr-Chr7 136283 141840 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0015 - - aprc:113864822 661.759