Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0012 ATGGAAGGGTTGGCGGTTCCATTCCCACACCTTTTGCCATTGCCGCCCTTTCCAAAACTTGCCACCGTTACTGCTGTTGCTGCTATTTCCACTTCCACTTCCACTTCCACCGGAGGAGGAGGAGGAGGATTTATCTCTCTCAAACAACAACAACTACAACTGCGTCCACGTCGTGGTTCTCCGCCCTATTGTACAGCATCATCATCATCATCATCTCACTCGCAGTCTGAGGAAGAAGAACGTGTGAGTGGAGATTCCATACGCGAAAGATTTCTGAATTTTTATGCTTCCCGTGGTCACAAGGTCCTTCCAAGTGCTTCTCTCGTCCCAGATGACCCCACCGTTCTTCTCACTATCGCTGGGATGCTTCAATTCAAGCCTATCTTCCTTGGAAATGTTCCCAGACAAGTCCCTCGTGCTACTACTTCACAGCGCTGCATCCGTACTAATGATGTCAACAATGTTGGCAATACCTCAAGACATCATACCTTCTTTGAGATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCAATGGGCATGGGACCTATCTACTGTTGAGTTTGGTTTGCCTCCTCAAAGATTATGGATTAGTGTTTATCAAGATGATGATGAGTCTTTTCAGTTATGGTCTCAACAGGTTGGTGTTCCCGTTGAGCGAATAAAGAGGTTGGGTGAAGACGACAACTTTTGGACCAGTGGAGTCACGGGTCCATGTGGTCCTTGCTCCGAAATTTATTATGATTTTCATCCTGAGAGGGGATACATCGATGCCGATCTTGGTGATGATACGCGTTTTATAGAGTTCTACAATCTAGTATTCATGCAATACAATAAAAAAGACGATGGTTCTCTTGAACCGCTAAAGCAGATGAACATCGATACTGGGCTCGGTCTAGAGCGCTTGGCTCGCATTCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTGATTCTCCCCATCATAGAGAAGGCGTCTCAATTAGCAAATGTTTCATATGGCATTTCTGATGATCAGACAAAGAGGTATCTGAAAATTGTAGGAGATCACATGCGTGCAATTGTGTTTCTCATCTCTGACGGGGTCGTCCCATCAAATGTTGGGAGGGGTTATGTAGTTAGACGGCTTATCAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAAGGTGATGGTAGGGGAGACCTTGAAGGAGCATTTTTACCTACTATTGCTGAGAAAGTAGTAGAATTAAGTACACACATTGACGCTGATGTGAAGAACAGAGCACCCCGAATCCTCGAGGAGTTGAAGAGGGAAGAGTTTCGGTTTGTGCAGACGCTGGAAAGAGGAGAGAAGTTGCTTGATGAAAAGCTTGCAGATGCTATATCAAGTGCTGAACGAAATGGATCTGTACCTTGTTTGGCTGGTGAAGATGTGTTTATTTTGTATGACACTTATGGTTTCCCCATGGAAATAACAAAAGAAGTGGCTGAAGAGCGTGGTGTGTGTATTGACATGAATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACACAATACTGTCAAGCTTGCCATTGGAAGCGGGACAAATATTGCAGACAATGTACCTGACACTGAATTTATTGGATATGAAAGTCTTTATTGTAAAGCTATCGTAGCAAGCCTAGTGGTAAATGGCGATCCAGCTGTACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTGCTAAACAAGACTCCATTTTATGCTGAATCTGGAGGACAAATTGGAGATCATGGTTTTCTGTATATATCAGAGGGTGAGAATCAACCTAAAGCTGTAGTGGAGATAATAGATGTTCAGAAGTCTTTTGGTAATATATTTGTTCACAAGGGTAGAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAACAAGTGGAAGCAACAGTGGATGTAAAGTTGAGGCAACGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCAGCACTTAAAAAAGTCATTGGTCAGGAGACCTCTCAAGCTGGTTCTTTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGTCCACTTCTTGATAGCGAGCTTGCAGAAATTGAAGTGCTGATAAACGGATGGATTGAGAATGCGATTCTTCTTCAGACCAAAGTGATGCCTCTTGCTGATGCAAAAAGAGCAGGAGCAATTGCAATGTTTGGAGAAAAATATGGGGAAGAGGTACGTGTGGTAGAGGTTCCTGGAGTATCGATGGAACTTTGTGGTGGGACTCATGTCAGTAATACTTCTGAAATTCGTGGTTTTAAAGTAATTTCAGAGCAGGGTATTGCATCTGGTGTCAGGCGAATAGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATGTCAATGCCCGAGATTCTTATCTGAAACAGCTATGTTCCACTCTCAAAGTTAAACCTGAAGAAGTAACTGCGAGGATAGAAAACCTTTTAGAGGAGTTACGGGTAGCAAGAAATGAAAATTCGGCTGTGCGTGCAAAAGCAGCAGTCTACAAAGCTTCAGTAATTGCAAACAGAGCGTTTTTGGTGGGGAACTCAAAACAGTACAGGATACTAGTTGAATGCTTGGATGATGTTGATGCGGAGTCACTTAAAAGTGCCGCGGAATATTTAATGGAAACACTGGCAGATCCAGCAGCTATTGTCCTGGGCTCATGTCCAGGTGAAGGGAAGGTTAGTCTAGTGGCTGCTTTTACTCCAGGTGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAGATAGCAAAATTATGTGGTGGAGGAGGAGGTGGAAGGCCCAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGATAATTTGGCTGATGCTCTCGAGAAAGCTAAGTCAGAGCTTATAGCTCATCTTGGTGAAAATGGGAACTAA 2946 0.4372 MEGLAVPFPHLLPLPPFPKLATVTAVAAISTSTSTSTGGGGGGFISLKQQQLQLRPRRGSPPYCTASSSSSSHSQSEEEERVSGDSIRERFLNFYASRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGNVPRQVPRATTSQRCIRTNDVNNVGNTSRHHTFFEMLGNFSFGDYFKKQAIQWAWDLSTVEFGLPPQRLWISVYQDDDESFQLWSQQVGVPVERIKRLGEDDNFWTSGVTGPCGPCSEIYYDFHPERGYIDADLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERLARILQKVPNNYETDLILPIIEKASQLANVSYGISDDQTKRYLKIVGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPTIAEKVVELSTHIDADVKNRAPRILEELKREEFRFVQTLERGEKLLDEKLADAISSAERNGSVPCLAGEDVFILYDTYGFPMEITKEVAEERGVCIDMNGFDIEMEKQRRQSQAAHNTVKLAIGSGTNIADNVPDTEFIGYESLYCKAIVASLVVNGDPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSFGNIFVHKGRVQKGVVEVGKQVEATVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELAEIEVLINGWIENAILLQTKVMPLADAKRAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKVISEQGIASGVRRIEAVAGEAFIEYVNARDSYLKQLCSTLKVKPEEVTARIENLLEELRVARNENSAVRAKAAVYKASVIANRAFLVGNSKQYRILVECLDDVDAESLKSAAEYLMETLADPAAIVLGSCPGEGKVSLVAAFTPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPDNLADALEKAKSELIAHLGENGN* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0012 981 MobiDBLite consensus disorder prediction 56 84 - -
Tpr7g0012 981 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 748 791 IPR012947 GO:0004812|GO:0005524|GO:0043039
Tpr7g0012 981 Gene3D - 534 647 - -
Tpr7g0012 981 Gene3D Bira Bifunctional Protein; Domain 2 82 315 IPR045864 -
Tpr7g0012 981 SMART tRNA_SAD_4 748 791 IPR012947 GO:0004812|GO:0005524|GO:0043039
Tpr7g0012 981 Hamap Probable alanine--tRNA ligase, chloroplastic. 74 978 IPR027522 GO:0009507
Tpr7g0012 981 Hamap Alanine--tRNA ligase [alaS]. 83 976 IPR023033 GO:0004813
Tpr7g0012 981 PRINTS Alanyl-tRNA synthetase signature 150 161 IPR002318 GO:0000166|GO:0005737
Tpr7g0012 981 PRINTS Alanyl-tRNA synthetase signature 272 283 IPR002318 GO:0000166|GO:0005737
Tpr7g0012 981 PRINTS Alanyl-tRNA synthetase signature 299 312 IPR002318 GO:0000166|GO:0005737
Tpr7g0012 981 PRINTS Alanyl-tRNA synthetase signature 350 366 IPR002318 GO:0000166|GO:0005737
Tpr7g0012 981 PRINTS Alanyl-tRNA synthetase signature 374 387 IPR002318 GO:0000166|GO:0005737
Tpr7g0012 981 MobiDBLite consensus disorder prediction 56 73 - -
Tpr7g0012 981 Gene3D - 658 793 - -
Tpr7g0012 981 Gene3D - 864 972 - -
Tpr7g0012 981 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 82 804 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Tpr7g0012 981 SUPERFAMILY ThrRS/AlaRS common domain 647 806 IPR018163 GO:0000166
Tpr7g0012 981 CDD AlaRS_core 85 314 - -
Tpr7g0012 981 SUPERFAMILY Translation proteins 542 647 IPR009000 -
Tpr7g0012 981 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 319 528 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Tpr7g0012 981 Gene3D - 795 856 - -
Tpr7g0012 981 SUPERFAMILY Class II aaRS and biotin synthetases 84 318 IPR045864 -
Tpr7g0012 981 TIGRFAM alaS: alanine--tRNA ligase 87 955 IPR002318 GO:0000166|GO:0005737
Tpr7g0012 981 Gene3D - 719 772 - -
Tpr7g0012 981 Coils Coil 827 847 - -
Tpr7g0012 981 PANTHER ALANYL-TRNA SYNTHETASE 83 971 - -
Tpr7g0012 981 Pfam DHHA1 domain 828 970 IPR003156 GO:0003676
Tpr7g0012 981 Pfam tRNA synthetases class II (A) 87 649 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Tpr7g0012 981 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 83 971 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0012 Tpr-Chr7 111643 120772 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0012 K01872 - gmx:100817906 1585.08