Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0011 ATGAGGTTGGCAATCCCAATCCCAATAGTAACATTAATAATATTTATACTAGGATGCTGTTCTGCGGAGCAATGCGGTAGACAAGCTGGGGGTGCCCTGTGCCCAGGGGGATTATGCTGCAGCAAGTTTGGTTGGTGTGGATCAACCATCGACTACTGTGGAGATGGGTGCCAGAGTCAATGTAGTGGAAGCAGTGGTGGCAGTAGCCTTAGTAGCCTCATCTCCAGGGACACTTTCAACCAGATGCTCAAGCATCGCGACGACAGTGCGTGTCAGGGGAAAGGTTTTTACACATATGACGCTTTCATTTCAGCTGCCAAGGCTTTCCCCAACTTCGCCAATAGAGGAGATACTGACACTAAAAAAAGGGAGATTGCTGCTTTCTTGGGTCAAACTTCTCACGAAACCACTGGTGGATGGGCAACTGCACCAGACGGTCCATATGCTTGGGGATACTGCTTTCTCAGAGAACAGAATCCCAGCGACTACTGTCAACCAAGTTCTGAATTCCCATGTGCTTCTGGCAAGCAATACTACGGCAGAGGTCCCATTCAGATATCTTGGAATTACAACTACGGACAGTGTGGAAGAGCAATTGGTGTTGACTTGCTCAACAATCCAGACCTCGTCGCCACTGACCCTGTTATATCCTTCAAGACTGCTTTGTGGTTTTGGATGACGCCTCAGTCACCGAAGCCATCATGCCATGACGTTATCACCGGTGGATGGAGTCCTTCTAGTGCAGATAGTGCGGCGGGGAGGCTACCGGGGTACGGTACGGTGACCAACATCATAAACGGTGGACTTGAATGCGGGAGAGGGCAGGATAGCAGAGTGCAGGATCGAATAGGATTTTACAAGAGATACTGTGACATATTTGGAGTTGGATACGGAGATAATCTTGATTGTTTTTCTCAGAGGCCATTCGGATCATCACTCCTGCTCAACACCATCGCCACCGCCTAG 966 0.4928 MRLAIPIPIVTLIIFILGCCSAEQCGRQAGGALCPGGLCCSKFGWCGSTIDYCGDGCQSQCSGSSGGSSLSSLISRDTFNQMLKHRDDSACQGKGFYTYDAFISAAKAFPNFANRGDTDTKKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFLREQNPSDYCQPSSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWSPSSADSAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGVGYGDNLDCFSQRPFGSSLLLNTIATA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0011 321 PANTHER CHITINASE-RELATED 10 312 - -
Tpr7g0011 321 Pfam Chitinase class I 73 303 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tpr7g0011 321 ProSitePatterns Chitin recognition or binding domain signature. 34 53 IPR018371 GO:0008061
Tpr7g0011 321 PANTHER CHITINASE 2 10 312 - -
Tpr7g0011 321 SUPERFAMILY Plant lectins/antimicrobial peptides 24 64 IPR036861 GO:0008061
Tpr7g0011 321 CDD chitinase_GH19 74 303 - -
Tpr7g0011 321 CDD ChtBD1_GH19_hevein 23 55 - -
Tpr7g0011 321 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Tpr7g0011 321 ProSiteProfiles Chitin-binding type-1 domain profile. 22 63 IPR001002 GO:0008061
Tpr7g0011 321 PRINTS Chitin-binding domain signature 32 40 IPR001002 GO:0008061
Tpr7g0011 321 PRINTS Chitin-binding domain signature 40 47 IPR001002 GO:0008061
Tpr7g0011 321 PRINTS Chitin-binding domain signature 47 54 IPR001002 GO:0008061
Tpr7g0011 321 PIRSF Endochitinase 1 310 IPR016283 GO:0004568|GO:0005975
Tpr7g0011 321 Gene3D - 73 303 - -
Tpr7g0011 321 ProSitePatterns Chitinases family 19 signature 1. 91 113 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tpr7g0011 321 Pfam Chitin recognition protein 24 61 IPR001002 GO:0008061
Tpr7g0011 321 Gene3D Endochitinase, domain 2 156 212 - -
Tpr7g0011 321 Gene3D - 22 64 IPR036861 GO:0008061
Tpr7g0011 321 SUPERFAMILY Lysozyme-like 70 310 IPR023346 -
Tpr7g0011 321 ProSitePatterns Chitinases family 19 signature 2. 216 226 IPR000726 GO:0004568|GO:0006032|GO:0016998
Tpr7g0011 321 SMART ChitinBD_3 24 61 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0011 Tpr-Chr7 108978 110323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0011 22 318 Glycoside Hydrolase AT3G12500 71.287 3.10e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0011 K20547 - egr:104419011 492.271