Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g3630 ATGGACGACGAAGAAGAGCAACAAAAGCTTCCAGATCTAGTAAAAGCTCTCATCCACCATTTACTCTCTCAAAATCTTCCCCCAAATTCCCAACCCTTAAACCCTAATTCCTCCCAATTTCAAAACTCTCTCCGTTACGCTCACCGCATTCTCACCAGCCACCTAACTCCCTCCATTACACCCGACGCCGCCGCAATCGCCGAATCAATCAAACGCCGTCTCGCCACCGAAGGTAGATCTTCCGAAGCTCTCTCATTCGCTGACTTATACACCAAATTCGCTTCAAAAGCTACCGATGTTGATAATAAGTGGGCCCTACTTCATCTCTTCAATATCATATCGCAAGATCGAAAACCCGCTGTTAATTCTCAATCTCGCCTTGATGCTTCGATGCTTCTCCCGAATTTAACAATCTCCGATAATAATGTTCGTCGCCGAATTGAGAATAAGGGATGGGAGGATGGTGTTGTGGTTCTTGGTAGGGATCCAAGGAATCGTCGCGAAGTTGCGTTTGGTGAGTATGTGAAATTGGTTAAGGAAGAAAATGATGTGACTGAGGAAGCTATGGTGACTGATGTGCTTTATGCTTGTCAAGGTGTTGATGGTAAGTATGTGAAATTTGATAATGAGAATAATGATTATGTTTTTTTGGATTCAATTAGAGTTTCTAGGGCTACTACTAGTATGGTTCATAAGCTTTGTGGATTAGGGGTTTTGTTTAAGAGGGTTATTGGGTATATAGACCAGAGTTTAGGTCGTTCTCCGGTGGAAGATGTAGGAACTGTTGGGCAGGCTTTTTGTTCTGCTTTGCAGGATGAGTTGAGTGATTATTATAAGTTGTTGGCTGTGCTTGAAGCTCAGTCTTCGAATCCGATTCCTTTGTTGTCGGAAACTGTGAGTTCGGGAAACTATCTTTCATTGAGGAGATTGGCTAATTGGCTTGCTGAGCCATTGGTGAAGATGAGGTTGATGGCTGATTTGGTTGATAAGTGTAGGGTTTTGCGGGGTGGTGCTATGGCTGGTGCGATTCATTTGCACGCTAGACATGGAGATCCGATGGTTCATGAGTTTATGAAGAGATTGCTGCAGCGTGTGTGTTCTCCGCTTTTTGAAATTGTGAGGAGGTGGGTTTTGGAAGGTGAGTTAGAAGATATATTTTCTGAGTTTTTCATTGTTGGGCAGCCTGTGAAAGCTGAATCCCTTTGGAGAGAGGGATATAGGCTCCATGATGCCATGCTTCCTTCTTTTATTTCAGCTTCTCTTGCTCAGAGGATTTTGAGGACTGGAAAGTCCATAAATTTTCTTCGTGTTTGCTGTGAGGACCGTGGTTGGGCTCGTGCTGCGACTGAAGTTGCCACTGATACAGGGGCCACAGCTAGACGGGGTGGTTTTGGTTATGGGGAAACAGATACCCTTGAGTCATTGGTTGATGAAGCTTCAAAAAGAATTGACAAGCATCTATTGGATGTAATTTATGAGAGGTATAAGTTCAAAGAACACTGTCTTGCGATTAAGCAGTATTTGTTGCTTGGCCAAGGTGATTTTGTGCAATATCTAATGGATATTGTTGGGCCTGAGCTTTCTGTGCCCGCTAACACTATAAGCTCTTTCAAACTCGCCGGATTGCTGGAGACTGCAATTCGGGCGTCAAATGCCCAGTATGATGACCCTGACATTTTGGATAGGCTCAGGGTCAAAATGATGCCACATGAAAGTGGTGATAGGGGCTGGGATGTATTCTCACTAGCATATGATGCAAGGGTTCCACTAGATACTGTGTTTACAGAGTCTGTGATGGCGAGGTATTTAAGAATTTTTAATTTTCTCTGGAAGCTTAAAAGAGTAGAACATGCACTTATTGGTGCCTGGAAGACCATGAAACCAAACTGCATAACTTCTAATTCCTTTAATAGATTGCAAGGTGCAGTAAAGATGCAGTTAGTTTCAGCATTGAGGCGCTGTCAAGTTCTTTGGGTTGAAATTAATCACTTCATTTCAAACTTGCAATATTATATAATGTTTGAAGTCTTGGAGATATCTTGGTCAAACTTTTTAAGTGAGATGGAGGTCGCCAAGGACCTTGACGATCTACTTGCAGCACATGAGAAATATATGAATTCAATTGTAGAGAAATCTCTCCTCGGAGAACTCTCTCAGTCCCTTTACAAGTCACTAATAGTAATATTTGATCTTATATTACGTTTTCGGAGTCATGCAGATATTTTATATGAAGGTATTCATGAGTTGCAAGCAAGAATCACAGAGTCCTCCCTATCCTCTCGAGACCAGAAGAAAACACGAAAGCAATTGAATGATAAATCTGCGGAAGAAGGATCCTGGATTGCTGATGGGAGGAAAGCCTTAACACAACGTGCTGGTGAATTTCTCCGTAAAATGGAACAAGATCTGGATGCAATTTCTAAGGAGTATTCATCATTGCAAGAGGAATTCATTTCTCAGCTGCCTGTGCAGCAACATGTTGATCTAAAGTTTCTCTTTTTCCGTCTTGACTTCAATGAATTTTATAGACGGGTTGTGTCCTAG 2544 0.423 MDDEEEQQKLPDLVKALIHHLLSQNLPPNSQPLNPNSSQFQNSLRYAHRILTSHLTPSITPDAAAIAESIKRRLATEGRSSEALSFADLYTKFASKATDVDNKWALLHLFNIISQDRKPAVNSQSRLDASMLLPNLTISDNNVRRRIENKGWEDGVVVLGRDPRNRREVAFGEYVKLVKEENDVTEEAMVTDVLYACQGVDGKYVKFDNENNDYVFLDSIRVSRATTSMVHKLCGLGVLFKRVIGYIDQSLGRSPVEDVGTVGQAFCSALQDELSDYYKLLAVLEAQSSNPIPLLSETVSSGNYLSLRRLANWLAEPLVKMRLMADLVDKCRVLRGGAMAGAIHLHARHGDPMVHEFMKRLLQRVCSPLFEIVRRWVLEGELEDIFSEFFIVGQPVKAESLWREGYRLHDAMLPSFISASLAQRILRTGKSINFLRVCCEDRGWARAATEVATDTGATARRGGFGYGETDTLESLVDEASKRIDKHLLDVIYERYKFKEHCLAIKQYLLLGQGDFVQYLMDIVGPELSVPANTISSFKLAGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLAYDARVPLDTVFTESVMARYLRIFNFLWKLKRVEHALIGAWKTMKPNCITSNSFNRLQGAVKMQLVSALRRCQVLWVEINHFISNLQYYIMFEVLEISWSNFLSEMEVAKDLDDLLAAHEKYMNSIVEKSLLGELSQSLYKSLIVIFDLILRFRSHADILYEGIHELQARITESSLSSRDQKKTRKQLNDKSAEEGSWIADGRKALTQRAGEFLRKMEQDLDAISKEYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYRRVVS* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g3630 847 Pfam Gamma tubulin complex component N-terminal 190 493 IPR041470 -
Tpr6g3630 847 Pfam Gamma tubulin complex component C-terminal 499 842 IPR040457 GO:0043015
Tpr6g3630 847 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 32 837 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Tpr6g3630 847 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 32 837 - -
Tpr6g3630 847 Gene3D - 498 841 IPR042241 -
Tpr6g3630 847 Coils Coil 796 816 - -
Tpr6g3630 847 Coils Coil 267 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g3630 Tpr-Chr6 39514816 39518634 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g3630 K16570 - gmx:100784710 1345.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3630 6 39514816 39518634 Tpr6g3630 6 39514816 39518634 ECH